KEGG   Oncorhynchus nerka (sockeye salmon): 115128616
Entry
115128616         CDS       T07952                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115128616
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:one03041]
    115128616
Spliceosome [BR:one03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    115128616
 Complex C
   U5 SnRNP specific factors
    115128616
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EML Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd PEP5_VPS11_N Beta-prop_IP5PC_F WD40_like
Other DBs
NCBI-GeneID: 115128616
NCBI-ProteinID: XP_029514452
LinkDB
Position
LG4:complement(56312482..56318179)
AA seq 348 aa
MIEPKKRPGDMALVPAGGVKRPRTELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMDLHYNTDGSLLFSASI
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVRLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLVYSMHGHGDSLTGLSLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgagccaaagaagagaccgggggacatggctttagttcctgccggcggagtcaag
aggcccaggacggagctgatcgccgccgcacagtcgcaacagctcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgctgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcccaatggagccaccttggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtatggggattgtgataactttgccaccctgaagggacacagt
ggagctgtgatggaccttcactacaacacagacggcagcctgctgttcagtgccagtata
gataagacagtgggagtgtgggacagtgagacgggcgagagaatcaagcgtctaaaaggc
cacacctccttcgttaactcctgctaccctgctcgacgcggaccccagctcgtctgtacc
ggcagtgacgacggaactgtcaggctgtgggacatccgtaagaagggggcggtccatacg
ttccaaaacacctaccaggtgttggctgtcacattcaacgacaccagcgaccagatcctg
tctgggggcatcgacaatgacatcaaggtgtgggacctgaggcagaataagctggtctac
agtatgcatggtcatggtgattctctgactggactcagcctgagctcagaggggtcctac
ctcctctccaactccatggacaacacagtgcgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtccgctgacggcagcaagattgcagcaggctcagccgacaggtttgta
tatgtgtgggacaccacgtctcgtaggatcctgtacaagctgccaggccatgctgggtca
gtcaatgaggtcgccttccaccctgaggagcctattgtcctctctggtgccagtgacaag
agactctacatgggagagattcagtag

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