Oncorhynchus nerka (sockeye salmon): 115128621
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Entry
115128621 CDS
T07952
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03250
Viral life cycle - HIV-1
one03272
Virion - Hepatitis viruses
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115128621 (pdcd6ip)
03272 Virion - Hepatitis viruses
115128621 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115128621 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115128621 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115128621 (pdcd6ip)
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
115128621 (pdcd6ip)
Exosome [BR:
one04147
]
Exosomal proteins
Proteins found in most exosomes
115128621 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
AAT
SOAR
COG3_N
Motif
Other DBs
NCBI-GeneID:
115128621
NCBI-ProteinID:
XP_029514461
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Position
LG4:complement(56432701..56460050)
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AA seq
885 aa
AA seq
DB search
MATFISVPLKKSSEVELVKPLSKFVTATYPTGEDQAEYIRSVEELNKLRKSALGRPLDKH
ESSLEILLRYYDQLCAVEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEKT
CVLFNGAALASQIASEQNLDSDEGLKAAAKYYQLASGAFGHIKDTVLSALNREPTMDISP
ETVGTLSLIMLAQAQEVFFLKATSDKMKDAIIAKLANQAADFYSDAFKQCQYKENLPKCI
YFQEVLPVLAAKHCIMQANAELHQSILAKQKKHFGEEIARLQHASELVKTVASRYDEYVS
VKDLSDKISRALTAAKKDNDFIYHDRVPEVKDLEHIGKAALVKATTITPPLSAKFTDLFE
KMVPMAVQQSMSVYSQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IIEKAHAIVQQGGLQSIEQLIRDLPELLTRNREILDESLKMLDDEESTDSELRSKFSQRW
NRTPSGDLYKPLRAEGGNFRSVLDKAVQADQVVRERYNTHCEMIALFCKPEAELTAAIPS
ANPAKTLQGSEVVSVLRSQLSQLEVVKREREVLETEIKGVTFDMSSSFLTALAQDGAINE
EALSMSQLDQSYGSYSQRVQASLRSQEELLGNVQASHQVFSSLKQSNSEANDREEVLKKL
ASAHDSYVEITSNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKDLQQSIARE
PSAPSFSVPAYQTNPTATGPTPAPRTVFQPQQPQAKAQPPERPPPPAFTPQAASAPGNPP
SNQPQPVNPPPMAPPSQAQGPPYPTYQGYPGYAYQMPMGYNPYAAYGQYNMPPTMQPNMQ
PYVPYQQAPAPGQGGYPVVPPTQQHPYTYQQQPQQPPQQPYYPQQ
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttttatttctgtcccgttaaagaagtcgtctgaagtcgaactagttaaaccg
ctctcgaaattcgttacggcgacatacccaacgggcgaggatcaagctgagtatatccga
tccgtggaggagttgaacaagctgcgcaagagtgctctggggaggccgctcgacaaacac
gaaagctcgctggaaatcctcctgaggtattatgatcagctgtgtgccgtggagccaaag
tttcccttctctgaaaaccagctgtgtctaaccttcacatggaaagatgcctttgataag
ggctcactgttcgggggctcagtcaaactagccctggccagtctgggctatgagaagaca
tgtgtgttgttcaatggagcagcgttggcaagtcagatcgcttcagaacaaaacctggac
agcgatgaaggactgaaggccgcagccaaatactaccagttggcaagtggagcatttggt
cacattaaggacacagtgctgtcggctctgaacagagagcctacaatggacatttctcct
gagaccgtaggaaccctcagtctcatcatgctggctcaggcacaggaagtcttctttctc
aaggctacttcagataagatgaaggacgccatcatcgctaaactggccaatcaggcggca
gatttctacagcgatgccttcaagcagtgtcagtacaaagagaacctgcccaagtgtatt
tatttccaggaggtgttgccggtgctggcagctaaacactgcatcatgcaggccaacgct
gagctacaccagtctatcctcgccaagcagaagaaacactttggggaggagatcgctcgc
ctgcagcatgcttcagagctggtgaagacggtagcgtctcgctatgatgagtacgtcagt
gtgaaagaccttagtgataagatcagccgtgctctgaccgcagctaagaaggacaacgac
ttcatctaccacgaccgcgtccctgaggtcaaagacctggaacacatcggcaaggcagcg
ctggtcaaggctaccaccatcacacctccgctcagcgccaagttcactgacttgtttgag
aagatggtgcccatggctgtgcagcagagtatgagtgtgtacagccagaggaaggctgag
accgtcaacagactggtaggaaccatgagggaagctactaacctctgcaacggtgtcctg
gcatctctgaacctgcctgcggctctggaggacctgtctggagattctatcccacaatcc
attattgaaaaggcccatgccatcgtccagcagggggggctgcagagcatagagcagctg
atcagagacctaccggaactactgacacgcaacagagagatcctggatgagtctctgaag
atgctggatgatgaggagtcgacagacagcgagctgagatccaagttcagccaacgctgg
aacagaactccctctggagacctctacaaaccactcagagcggaggggggtaacttccgt
agcgtgttggacaaggcagtgcaggctgaccaggtggtcagggagcgttacaatacacac
tgtgagatgatcgctctcttctgtaaacctgaggctgaactcaccgctgccataccttca
gccaaccctgctaagacattgcagggcagcgaggttgtgagtgtgttgcgttcccagctg
tcccagctagaggtggtgaagagagagagggaggtgctggagacggaaattaagggcgtg
acctttgacatgtcctccagcttcctgacggctctggctcaggacggggccatcaatgag
gaggcactgtcaatgagccagcttgaccaatcatacggcagctacagccagagggttcaa
gccagcctccgctctcaggaagagctgttgggcaacgtgcaggcatctcaccaggtgttc
tccagtctgaagcagtccaactcggaggctaatgatcgtgaggaggtgttgaagaagctg
gcctcggcccacgacagctacgttgagatcaccagcaacctcagagagggcaccaagttc
tacaatgacctcaccgagatcctgctgaagttccagaacaagtgcagtgacatcgtcttc
gcccgcaagacagaacgggatgaactgctgaaggatttgcagcagagcatcgccagggag
cccagtgccccgtccttctctgtccccgcctaccagactaaccccaccgccactggacca
acccccgcaccaaggactgtcttccaacctcagcagccccaggcgaaggcccagcctccc
gagcggccccctccccctgccttcaccccccaggccgcctccgcaccaggcaaccctccc
agtaaccagcctcaaccagtaaaccccccacctatggcccctccctcacaggcccaggga
ccgccttaccccacataccagggataccccgggtatgcctaccagatgcctatgggttat
aacccgtatgctgcgtacggccagtacaacatgccccccactatgcagcctaacatgcag
ccctacgtcccctatcagcaggccccagcacccggacaggggggctaccctgtggtcccc
cccacacagcagcacccctacacctaccaacagcagccccagcaaccaccacaacagcca
tactacccacaacaataa
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