Oncorhynchus nerka (sockeye salmon): 115128653
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Entry
115128653 CDS
T07952
Name
(RefSeq) collagen alpha-2(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
115128653
NCBI-ProteinID:
XP_029514572
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Position
LG4:57907769..58017270
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AA seq
687 aa
AA seq
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MTMLLAPACVLLLLGGRVLGGGYPPMPQMKYMQPMMKGPVGPPFREGKGQYLDMPPMMDV
KGEPGPQGKPGPRGPSGPSGLPGKPGLGKPGFNGQPGPQGPPGFPGIGKPGLPGLPGKGG
MKGMPGNNGEVGLRGEPGPRGLPGQPGLPGPAGLSLNGKPGLPGGRGQPGSRGEPGQKGG
PGNPGERGINGENGNGKPGIPGPRGPIGLRGLPGPAGNPGVGKPGLNGLLGPSGPKGDQG
LPGGIGEPGEAGNPGLQGQAGPIGLGKPGNDGLPGGPGPLGPKGEPGLRGSPGFPGTPGY
GKPGLSGLKGDIGLSGGPGVPGDKGEHGIEGQPGDMGPDGHPGPPGLQGPMGLPGKHGMP
GLKGELGPQGHPGLPGFRGDQGPGGLSGKPGIPGDKGPPGPNGAIGKPGPKGEAGHIGLP
GNPGLLGNPGPKGEFGFVGSPGPRGQSGIPGLQGPSGPMGPQGIPGLKGESGLPGLPGLG
MLGEKGVPGPQGPQGKPGNSGLNGNPGPPGPPGPPGPAGNGQTIVAGPTDTELGGGEVPN
GRNPKPQFGRAELSASLAPAFTAILTTPFPPSGMPIKFDRTLYNGQNAYNPATGIFTSPM
SGVYYFAYHMHVKGLNLWVALYKNNVPATYTYDEYKKGYMDQASGSAVLELKENDQVWMQ
MPSDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgctgttggctcctgcctgtgtgcttctgctgctgggaggccgtgtccttggg
ggaggctacccccccatgccccagatgaagtacatgcagcccatgatgaagggccccgtg
ggaccccccttccgagagggcaagggacagtacctcgacatgccacccatgatggacgta
aagggcgagccagggccacaaggaaaacctggacccagaggcccatctggtccatcagga
cttccgggaaaaccaggactgggaaaaccaggtttcaatggccagcctggccctcaaggg
cctccaggctttcccggcattgggaagcctggacttccaggtctcccaggaaaggggggc
atgaaggggatgcccgggaataatggtgaggttgggctcaggggtgaaccaggtcccaga
ggacttccaggtcaaccaggtctccccgggccagctggcctgtctctgaatggcaaaccg
gggcttcccggcggcaggggccaacctgggtctcgtggagaaccaggacagaaaggtgga
cctggaaatcccggggagcgtggaatcaatggggagaatggcaatgggaagccagggata
ccaggacccaggggccccatcgggcttaggggcctaccagggccagctggtaacccgggt
gtgggcaaaccaggactgaacgggcttcttggtccatctgggcctaaaggggatcagggg
ctcccaggaggaataggagagccaggtgaggccggcaatccagggctgcaaggccaggca
ggacccattggattgggcaagcctggaaatgatggattgcctggaggaccaggtccactt
gggcctaaaggtgagccagggctgaggggttctccagggtttcctggaactcctggctat
ggcaagcctggtctttctgggctgaaaggagacataggcctttccgggggaccaggggta
cctggggataagggtgagcatgggattgaggggcagccaggagacatgggtccagacgga
cacccaggaccaccaggactacagggccccatggggctcccaggaaaacacggcatgccc
ggcctgaagggagagttgggtccccagggtcatccaggtctgccagggttcagaggggat
cagggtcccggtggtctgtctggaaaacctggcattcccggagacaaaggcccgccgggt
cctaatggggctatcggaaaaccagggcccaaaggtgaggcagggcatataggcctgcca
ggaaacccaggtcttttaggcaatcctggaccaaaaggggagtttgggtttgttgggtct
ccaggaccaagaggccagtctggtatccctggtcttcaggggccttcagggccaatgggg
ccacagggtatcccaggtctgaagggcgaatctgggctgcctggtcttccagggctgggc
atgcttggagaaaagggagttcctggtcctcaaggtccccaaggaaaaccaggcaactct
gggcttaacggcaacccaggcccacctgggccacccgggccccctggccctgcaggaaat
ggccaaaccatcgtggctgggccaacggatacagagttgggtggaggcgaggtaccaaac
gggaggaacccaaaaccacagtttggccgtgcagagctctctgcctctctggcaccagct
tttactgccatcctcaccacacccttccctccctccgggatgcccatcaagttcgacagg
accctgtacaacgggcagaatgcctacaaccctgccaccggtatcttcaccagccccatg
tctggcgtctactactttgcctaccacatgcacgtaaagggactcaatctgtgggtggcg
ctttacaaaaacaatgttcccgccacatacacctacgacgagtacaagaagggctacatg
gaccaggcgtctggtagcgcagtccttgagctgaaggagaacgaccaggtgtggatgcag
atgccctcggaccaggctaacgggctctactccaccgaatacatccactcgtccttctca
gggttcctgctctgtcccacataa
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