Oncorhynchus nerka (sockeye salmon): 115128690
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Entry
115128690 CDS
T07952
Name
(RefSeq) nuclear pore complex protein Nup153-like isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115128690
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115128690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115128690
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115128690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
115128690
NCBI-ProteinID:
XP_029514634
LinkDB
All DBs
Position
LG4:complement(60096876..60126996)
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AA seq
1409 aa
AA seq
DB search
MAATGGGKIRSRRYHIASKPYAKSKQQQSGLISRVTDTVKSIVPSWMQKYFTNGEAAEGG
GAMLGEEPNSQAPPNGSEEVDPLPDGRDSAEPATSNTEPSTSRVSLNFQDVLSRPPLNRS
HLHFPSLDSTPALGSPSSLFSQPSTSSAPFAGASTSFSLVKEIKDNSSQHEDDNISTTSG
FSSRASEKDVPNFKTTSLPQLCSPEMDRPQQSQSSLKKPAFNLSVFGTSSTVSVSQSSQS
STSTLNSSVLNSSQLGDSPFYPGKTTYGGAAAVRTARSRTATPYQAPLRRQIKAKPAGAP
PCGVTSATARRILQSLERMSSPLADAKRIPSTVSSPLSKFPDGSTLDLSYFQAPKKRLDS
PLPPVQKLVIPAAALVSGSRPMSFRPSLTPRGLTQTPGGTPTRQSPLIPEAVAYPCQSTS
SSSLPTYPLSSTPATSSTGSGGGKMKRERTSTRPSSKQPEDQIAELPALPANTSISLPSF
SFPNPKPVVTTTPVLVEPVTNEVPPTTAPSTPFTFSSPIVMTTAASPPSFSPSSGFTFSA
PVVKTGLSLSNGKMVTPVVAAVKHAASESMEEFEGPFKPAKMLKQGSVLELKGPGFSVPV
TRTSPVPKAPQETPALSTAPSLGDLFKAPTGSWDCDVCMVRNKPTATKCVACMTPHPNST
LVKTDTEHFTTLSGLEGSTTTTAAGFGALFTKSAGSWDCDTCLVQNKPQAVKCVACETAK
PGSGVKATLTLHAFSEAKTLPAAAPFLGFGDKFKKPEGAWECDMCMVQNKAQDIKCVSCM
STKPGVTAATQSLTPAPVSITPLLGFGAQFKKPDGAWECDVCCVQNKGADQACVACQTPK
PGALVEPKAFGSSSFGIQSLSDTCSGGFKFDMGVSSDSASGSGGFKFGGTLSDSSSGGFK
FGAAASSDTTSTDTSSSAGFKFGSSTEGFKFGASTASTPAADEGRKAEAPSMGAGFKFGI
SGGISFGTTAAASTESKPSDGGFSFGLSKPTTTTSTLSLPVSTENDSGASTETTTTASAP
IFGKLAEPPTLATPLGGSIFEELLEKDKDPFTFGKPEKEASMGSGFLFSAASKGAEASAP
PGGFSFFIVDPSADQPKAPTFTFGKLADSETPAAKAPKPSFSFGQSATDAAASKPVFGFM
STTTTSTSTTPAPRLFGPISSTTPAPIPDPSTFLFGQSASSEATPAKSFLFGQSQDSLPA
PAASLNPGPAQPFLFGSGPNTAAPSFAFGAAPLSTALSTAPSAAPAQFVFSPASSSGFGS
GQAPTFGQGTSQPNAPAFGSPAPSPFSSTASQPPAFGGKANSVPVFDHQANSTPAFGSST
PAAPGGGFQFGGVGAFGTSSNSTGVFAFGGVPGGSPASSATPSMAPKPSAPGGGFNFIGS
TKSTTFTAAPAGQNSIARRKIKTAVRRKK
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacgggtggagggaaaattagaagcagaagatatcatatcgcttcaaaacct
tacgccaaaagcaaacagcagcagtcgggcctgattagtcgagtgacagacacagtcaag
agcatcgttccttcttggatgcaaaaatacttcacaaacggggaggctgcagaaggggga
ggggccatgttgggggaggagccgaacagtcaggcccctcctaatggcagtgaggaggta
gacccccttcctgatggacgggactctgcggagcccgctaccagtaatacagagccttcg
acaagcagggtatccctgaacttccaggatgttctgtcgaggccccccctcaatcgctcc
cacctccatttcccctccctggactccacaccggccctggggagcccgagctcccttttc
tcccagccctccacctcctccgcccccttcgctggggcgtcgacaagcttctccctagtc
aaggagatcaaggacaatagctcccagcacgaggatgacaatatctccaccaccagtggc
ttctcatcacgcgcatcagaaaaagatgtaccaaactttaagaccacgtcgctaccccag
ctctgttctccggagatggaccggccccagcagtcccagtccagtctcaagaaacctgca
ttcaacctgtctgtctttgggacttcctccactgtgagtgtcagtcagtcaagtcagtcc
tccacttccacgttgaacagttcagtgctgaactccagtcagttgggggattcccccttc
tacccagggaagactacctacgggggagcagctgctgttagaacagcccgctcacgcaca
gccacaccttaccaggctccattgcggagacagatcaaggccaagcctgctggggctccg
ccctgtggggtgaccagcgctactgcccgacgcatcttgcagtccctggagcgcatgtcc
agccccctcgctgatgccaagagaatcccctctacagtgtcctctcccttgtcaaaattc
cctgatggcagcactctggacctttcatatttccaggcccccaaaaaacgactggactct
cccctccccccagtccagaagttggttatcccggctgcagcgttggtgtctgggagccgc
ccaatgtccttcaggccctctctgacccccaggggcctgacccagacccccggaggcacg
cccacaagacaatcccctctgattcctgaagcagtggcatatccttgtcaaagcacaagc
agcagcagcctgcccacctaccctctgtccagcactcctgcaaccagcagcacagggtca
ggaggagggaaaatgaagagggagaggaccagcacaagaccctcgtccaaacaacctgaa
gaccagattgctgagctaccggccctgccggccaacacctcaatcagtctgcccagcttc
agcttccccaaccccaagcctgttgtcactaccacacctgtcttggtagagcccgtcact
aacgaggtgccaccgactacagcaccctccacacctttcactttctcctcccctattgtc
atgacaactgctgctagcccaccatccttttccccgtcttctggatttaccttcagtgca
cctgtagtgaaaacgggtctgtcactatccaatgggaagatggtcaccccagtagtggca
gcagtgaagcatgctgccagtgagagtatggaggagtttgaagggccgtttaaaccagcc
aagatgttgaaacagggcagtgtgctggagctcaaaggacctgggttttccgttcctgtt
actcggacctcccctgtccccaaagccccccaggagaccccagccctgtccactgccccc
tcccttggggacttgttcaaagcgccaacaggctcctgggactgtgacgtctgcatggtt
aggaacaaacccactgccacaaagtgtgtggcctgtatgaccccacatccaaactctact
ttagtgaagactgacactgaacacttcacaacgttgtccgggctggagggttccaccact
actaccgctgctggttttggagccctgttcacaaagtctgcgggaagctgggactgtgac
acttgtctggttcagaacaagcctcaagcagtcaaatgtgtagcctgtgagacagccaag
cctgggtctggagttaaagccacactgactctgcatgccttttcggaggctaagactctg
cccgctgctgcccccttcttgggcttcggggacaagtttaagaagccggagggagcgtgg
gagtgtgacatgtgcatggtgcagaacaaggcgcaggacatcaagtgtgtttcctgtatg
agcactaagccaggagtgacggcagcgactcagtctctaactcccgcccctgtcagcatc
actcctctactaggctttggggcccagttcaagaagccagatggagcgtgggagtgtgac
gtgtgctgtgttcagaacaagggagcagaccaggcgtgtgtggcctgtcagacccccaag
cctggggctttagtagagcctaaagcattcggttcctcgtcatttggtatccagtccttg
tctgacacctgctcagggggattcaagtttgacatgggggtgtcatcggactcagcctct
ggttctgggggcttcaaattcggcggcaccctctctgactcctcttcagggggcttcaaa
ttcggtgcagctgcctcatcagacaccacctcaacagacaccagcagctctgcaggcttc
aaattcggcagctccacagagggcttcaaatttggagcatctactgcttccacccctgca
gcggacgaggggaggaaggctgaagccccgagtatgggtgccgggttcaaatttggcatc
agcggtgggatctcgttcggcactacagcagctgctagcacggagagcaaaccctcggat
ggagggttctcctttggactatcaaaaccgacaaccaccacctctactttaagccttcct
gtctctacagagaacgacagtggagcttctacagaaaccaccacaacagcatcagctcct
atttttgggaagctggctgagcctcctaccctggccacaccactagggggcagcatattt
gaggaattgctagagaaagacaaggaccctttcacctttgggaagcctgagaaggaggcc
tctatggggtctgggttcctgttcagtgctgctagtaaaggggcggaggcatcggctccc
cctggaggcttttccttctttatagtagatccatctgcagaccagcccaaagcacctacc
ttcacatttgggaagctggcagacagcgagaccccagcagcaaaagcccctaagccctca
ttcagctttgggcaaagcgctacagatgctgcagcctcaaagccagtgtttggatttatg
tcaaccaccaccacctctacttccaccacccctgcccccaggctgtttgggcccatcagc
agcactaccccagcccctatcccagaccccagtaccttcctgtttgggcagagtgcctcc
agtgaggccaccccagccaagtccttcttgtttgggcagagccaggacagcctgcctgcc
cctgcagcttccctgaaccctggcccggctcaaccattcctgtttgggtctggacctaac
actgctgctccctccttcgcttttggagcggcaccgctctccactgccttatctacagct
ccatcagcagcccctgctcagtttgtattcagccctgcctcatcctctggctttgggtcg
ggacaagctcctacctttggtcagggtacctcccagcccaatgcccctgcgtttggttct
cccgccccgtcccccttctcttccacggcctcccagccccctgccttcggggggaaagcc
aactctgtccctgtgttcgaccaccaagccaactccacgcctgcttttggctcatccacc
cccgccgcaccaggtggaggtttccagtttggaggagtcggtgcgttcggcacgtccagt
aacagcacgggggtgtttgctttcggaggggtaccaggagggtcccccgcctcttctgcc
acgccctccatggcacccaaacccagtgcacctggaggtggctttaactttattgggtca
acaaagagcaccaccttcactgcagcccctgcaggacagaactcaatcgctagacgcaag
atcaaaacggctgtccggcgtaagaagtaa
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