Oncorhynchus nerka (sockeye salmon): 115128831
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Entry
115128831 CDS
T07952
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115128831
09122 Translation
03013 Nucleocytoplasmic transport
115128831
03015 mRNA surveillance pathway
115128831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115128831
03041 Spliceosome [BR:
one03041
]
115128831
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115128831
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115128831
Spliceosome [BR:
one03041
]
Complex C
Other components
EJC/TREX
115128831
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115128831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
115128831
NCBI-ProteinID:
XP_029514815
LinkDB
All DBs
Position
LG4:complement(63515806..63527917)
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AA seq
347 aa
AA seq
DB search
MTEQDVENELLDYEEDDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRTLALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEILRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDVITPPLLLRPPPLSFLHTLHLSPLICLAWRVMGVEELPPLVCVRLTHQVARAGRF
GTKGLAITFVSDETDARTLNDVQDRFEVNISELPDEIDISSYIEPTR
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactatgaagaggatgatgtggtggga
gatctatcaggaggggatattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgaatgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccaccctacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcatttcagatcagcaaagagtacgagagattctccaaatacatg
ccgactatcaaggtggcagtgttcttcggtggcctgtccataaagaaggacgaagaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaaccctggccctgatc
cgtaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaactcgacatgcgcagagacgtccaggagatactccgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctaagcaaagagattcgccccgtctgccga
aagttcatgcaagatgtaattacacctcctctcctcttgcgtccaccacccctctccttc
ctccacaccctccacctatcccccttgatctgccttgcctggcgggtaatgggggtggag
gagttacccccccttgtttgtgtgcgtcttactcatcaggttgccagggcgggcaggttt
ggcaccaaaggcctggccatcacatttgtgtctgatgagacggatgcccgtactcttaac
gacgtccaggaccgattcgaggtgaacatcagcgagctgcccgatgagatagacatctca
tcttacattgaaccaacccggtaa
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