Oncorhynchus nerka (sockeye salmon): 115129183
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Entry
115129183 CDS
T07952
Name
(RefSeq) THO complex subunit 3-like isoform X1
KO
K12880
THO complex subunit 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115129183
09122 Translation
03013 Nucleocytoplasmic transport
115129183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115129183
03041 Spliceosome [BR:
one03041
]
115129183
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115129183
Spliceosome [BR:
one03041
]
Complex C
Other components
EJC/TREX
115129183
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115129183
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_Aladin
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR35_TULP_N
RMC1_N
eIF2A
WD40_RFWD3
Beta-prop_NOL10_N
Beta-prop_HPS5
Beta-prop_TEP1_C
NBCH_WD40
Tricorn_2nd
PD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
TRM82_WD
Beta-prop_SPT8
Beta-prop_ACSF4
ASA1
B-prop_COPA_B_2nd
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_1st
PAC11
Peptidase_S9_N
DPPIV_N
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Beta-prop_ELP1_1st
Cytochrom_D1
WD_LRWD1
Beta-prop_WDR11_1st
YNCE
Motif
Other DBs
NCBI-GeneID:
115129183
NCBI-ProteinID:
XP_029515133
LinkDB
All DBs
Position
LG5:871333..875757
Genome browser
AA seq
322 aa
AA seq
DB search
MASKYYQEMQESFRNNNKSREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDVFVTASGDKTIRIWDVRTTKCTATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDVKSHRSRAEEQFKFEVNEISWNNDNNMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWTVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDNNRESGTVKLFGLPNDS
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaatattatcaagagatgcaagagagttttagaaataacaacaaaagcagg
gaattccctgcgcatagcgctaaagtccattcagtagcatggagttgcgacggcaggagg
ttggcatctggatcttttgataaaacagcaagcgtatttgtcttggaaaaagaccgtttg
gtgaaggagaacaactacagaggccacggagacagtgttgatcagttgtgttggcatcct
accaacccagacgtgtttgtcactgcatcaggggacaagaccatacgcatctgggacgtc
agaacaacaaagtgcacggctactgtcaacactaaaggggaaaacatcaacatctgctgg
agtcccgacggccaaacgatagccgttgggaacaaggatgatgtggttaccttcatcgac
gtcaaatcacaccggtcacgggctgaggagcagtttaagttcgaagtcaacgagatctcg
tggaataatgacaacaacatgttctttctcaccaatggaaacgggtgtatcaacatcttg
agttaccccgagctgaagcccatccagtcgatcaacgcccatccctccaactgcatctgc
atcaagtttgaccccacggggaagtactttgccacaggaagtgcagatgccctggtcagt
ctgtggaccgttgaagaactggtctgtgttcgttgtttctccaggttggactggccagtg
agaacattgagtttcagccatgatgggaagatgctggcttcagcctcagaagaccacttc
atagacatagcagaggttgaaacaggagagaagctgtgggaggtccagtgtgagtctcct
acgttcacagtagcctggcatcctaagagaccgctgctggcatacgcatgtgatgacaag
gaagggaagtacgacaacaatagagagtctggcacagtcaaactgtttggattacctaat
gattcctga
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