KEGG   Oncorhynchus nerka (sockeye salmon): 115129183
Entry
115129183         CDS       T07952                                 
Name
(RefSeq) THO complex subunit 3-like isoform X1
  KO
K12880  THO complex subunit 3
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03013  Nucleocytoplasmic transport
one03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115129183
  09122 Translation
   03013 Nucleocytoplasmic transport
    115129183
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115129183
   03041 Spliceosome [BR:one03041]
    115129183
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     115129183
Spliceosome [BR:one03041]
 Complex C
  Other components
   EJC/TREX
    115129183
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115129183
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_WDR35_TULP_N RMC1_N eIF2A WD40_RFWD3 Beta-prop_HPS5 NBCH_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_SPT8 PD40 B-prop_COPA_B_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Peptidase_S9_N DPPIV_N Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_ELP1_1st Cytochrom_D1 WD_LRWD1 Beta-prop_WDR11_1st YNCE
Other DBs
NCBI-GeneID: 115129183
NCBI-ProteinID: XP_029515133
LinkDB
Position
LG5:871333..875757
AA seq 322 aa
MASKYYQEMQESFRNNNKSREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDVFVTASGDKTIRIWDVRTTKCTATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDVKSHRSRAEEQFKFEVNEISWNNDNNMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWTVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDNNRESGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtccaaatattatcaagagatgcaagagagttttagaaataacaacaaaagcagg
gaattccctgcgcatagcgctaaagtccattcagtagcatggagttgcgacggcaggagg
ttggcatctggatcttttgataaaacagcaagcgtatttgtcttggaaaaagaccgtttg
gtgaaggagaacaactacagaggccacggagacagtgttgatcagttgtgttggcatcct
accaacccagacgtgtttgtcactgcatcaggggacaagaccatacgcatctgggacgtc
agaacaacaaagtgcacggctactgtcaacactaaaggggaaaacatcaacatctgctgg
agtcccgacggccaaacgatagccgttgggaacaaggatgatgtggttaccttcatcgac
gtcaaatcacaccggtcacgggctgaggagcagtttaagttcgaagtcaacgagatctcg
tggaataatgacaacaacatgttctttctcaccaatggaaacgggtgtatcaacatcttg
agttaccccgagctgaagcccatccagtcgatcaacgcccatccctccaactgcatctgc
atcaagtttgaccccacggggaagtactttgccacaggaagtgcagatgccctggtcagt
ctgtggaccgttgaagaactggtctgtgttcgttgtttctccaggttggactggccagtg
agaacattgagtttcagccatgatgggaagatgctggcttcagcctcagaagaccacttc
atagacatagcagaggttgaaacaggagagaagctgtgggaggtccagtgtgagtctcct
acgttcacagtagcctggcatcctaagagaccgctgctggcatacgcatgtgatgacaag
gaagggaagtacgacaacaatagagagtctggcacagtcaaactgtttggattacctaat
gattcctga

DBGET integrated database retrieval system