Oncorhynchus nerka (sockeye salmon): 115129228
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Entry
115129228 CDS
T07952
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115129228
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115129228
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_19
TPR_MalT
TPR_16
HrpB1_HrpK
UTP6_C
TPR_21
Motif
Other DBs
NCBI-GeneID:
115129228
NCBI-ProteinID:
XP_029515198
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Position
LG5:complement(2325448..2332502)
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AA seq
721 aa
AA seq
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MAAEGSDLEDLSSNGLMEGPSAPEATEAVQHPTEMEEVSEENGGEEASEAAAATAYNMPL
VENEEEEDGELPADFDRLWKLAHDNPQDFSSWTDLLQYSEQESHMTASRRALVAFLARYP
LCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLPESSQ
CIRSAFEEAVAAAGLDFHSDRLWELYIEWEKEQGDMKAATGVYDRILRVPTQLYSSHYEK
FKTHLNAHAPKDILSAVEYEGLLEESKQIHKTEKAELAEGEDELPPGEEKEPTEEEVIPK
MRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLKAWHSYLDWELTQLG
GGGEKEVETEPGSMEGQEEEQKEGSKSSGIIAGGDRRVRILFERCLIACALYEEFWTKYV
QYLEPQSLYEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLESLETSIPGL
AMVRLRRAGLERRAGRLDESEALLRDAVDQAKETPHLHAFYSIKLARLLLKLCKNPSKAR
GVLQEALEISPDNGKLHLNLLELEVSGDPRGSPEGVQQCVTRALAAPLSPRTKILFSQRG
LQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRRAENGDSEDPEKMSKGEDCSAVPAPPP
APPTMPHVPMTTPPPPMMGGDMSAAHAGYAGYGSWYQQPQYGGYGGYQQPWNYNQGYYPP
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaaggctcggatttagaagacctgagcagcaacgggctaatggagggtcct
tcggctccggaagccacggaggctgtccaacatccaacagagatggaagaggtatcagag
gaaaatggtggagaagaggcttcagaagcagcagctgcgacagcatacaacatgcctctg
gtggagaatgaggaggaagaggacggagagttgccggcggactttgaccgactctggaag
ctggcccatgacaatccacaggatttttctagctggactgacctgctgcagtacagtgag
caagagagtcacatgacagcatcacgtcgagcgctggttgcctttctggcgcgttacccc
ctgtgctacggatattggaagaagtttgccgacttggagcgacgtgcaggctacaccaac
aaagctcaggaggtgtgtgttcagggtctgaaggccatccctctgagcgtagatctgtgg
atccactacattaacctgctactgggcacgctgaacatgaacctgccagagtcctctcag
tgcattcgcagtgcatttgaagaggcggtggcagcggcaggactagacttccactctgac
cgtctgtgggagctgtacatcgagtgggagaaggagcagggagacatgaaagctgccact
ggagtctacgacagaatcctcagagtccccactcagctgtacagcagccactatgagaaa
ttcaagactcatcttaatgctcatgcgcccaaggacatcctctcagcagtggagtatgag
gggttgcttgaggaatctaaacagatacacaagactgagaaggctgagttggctgagggg
gaagatgagttaccgcctggggaagagaaggaacctacagaggaagaggtgattccgaag
atgcgagaactcctattggctcgcagggagaaggtgtaccaggaccttgagggagaggtc
aggaagaggtggaactttgaggaagctatcaagcgtccttatttccacgtgaagcctctg
gaccggacccagctgaaagcctggcactcctacctggactgggagctcacccagctggga
ggggggggtgaaaaggaggtggagaccgaaccaggctctatggagggccaggaagaggag
caaaaagaggggtcaaagagcagtgggatcattgccgggggtgaccggagggtacggatc
ctgtttgagcgctgtctgattgcctgcgcgctctacgaggagttctggaccaagtatgtt
cagtacctggaacctcagagtctgtacgaggcacggggagtgttcaggcgagcctgtgag
atccacctggcacacaaacacaccatgcacctgcagtgggccacttttgaggagaggcat
ggtgatctaacagaggcacggcgtgttctagaatctctggaaacctctatcccaggattg
gccatggtccggctgcgcagggcggggctagagagacgggcgggccggctagatgagtca
gaagctctgctcagggacgcggtggaccaagccaaagagactcctcacctccatgcattc
tactccatcaaactagcccggctgttgctgaagctttgcaagaaccccagcaaggcccgg
ggtgtcctgcaggaggcgctggagattagcccggataacggtaaactgcacctgaacctg
ctggagctggaggtgtccggtgaccccagagggtcacccgagggggtgcagcagtgtgtg
actcgggcactggccgcacccctctccccacggaccaagatcctcttttcccagaggggc
ctacagtacgctgaggactatgggacttctgtgcaaagtgtgctaacagtctatgaagag
catcagaagctgctgaaagagcttggcaacaagaagagaagggctgagaacggagacagc
gaggacccagagaagatgagtaaaggagaagactgctccgctgtgcccgctccaccacca
gcccctcccacaatgccccatgttcccatgacgacaccacctccacccatgatgggtggg
gacatgagtgcggctcatgcaggctacgcaggctatggaagctggtatcagcaaccacag
tacggaggatacggaggctaccagcaaccctggaactacaatcagggttactaccctccc
agctaa
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