Oncorhynchus nerka (sockeye salmon): 115129269
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Entry
115129269 CDS
T07952
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115129269 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115129269 (polr1a)
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115129269 (polr1a)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115129269 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
115129269
NCBI-ProteinID:
XP_029515291
LinkDB
All DBs
Position
LG5:3704356..3715574
Genome browser
AA seq
1703 aa
AA seq
DB search
MLFGKEVPWRRLEGMTFGMYTAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEDYCAHVNKRKTGDDHSSP
IKHICEKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPSGFYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELQLEEVQE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTSLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKESPRYVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKRGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFESIVESYLKDIQVKQLPEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILYYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGEGDGEEESMIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDAEGEDLVEEKE
EQAEENSEEVPDEVPGDLATEEPGGAGARKRSKQKSTHTQDSMRVNTVLETSSSIEGYSY
DSQQGLWCEVTLILPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKELE
LKTEGINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQATMLGSHDKLVSPS
ACIVVGKVVKGGTGIFDLKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcgactggagggaatgacatttggaatgtac
actgcagaagaaataagaaagttgagtgtcaagaacatcaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttctttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgctggatgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcctggaaggcaatgcccaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaacggaagacaggcgacgatcacagctcacca
atcaagcatatctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgccctcactgcaagagtggccgatcacaagtgcgcagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccc
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactttgggataaagaaggtttcttcctgaagtgcttgttctctggactg
gaggagttggagagctcacccagtggcttttaccctgaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtgatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaggaaaaggagttgcagctggaggaggtacaggaa
gccgacccctctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaatatagtctttgacagt
gacatggacaaactgatgacggagaagtaccctggcattcgtcagatcttagagaagaag
gatggtttgttcaggaagcacatgatgggcaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcaggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactagcctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacacttgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcaggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtctccacgctatgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgcta
gtgggggtgttggacaaggcccactatggcagctcagcatacggcctggtccactgctgt
tacgagctatatggaggagagaccagcggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccgggggttcactatgggtgtggaggatatcttggtgaaa
cgaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccttgcaggcagcctttaacctgcctgacaccgtggacgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcctgtctgctgggtcagattgagctggagggtcgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtatgaaagttcgccc
cgctctggaggctttgtgtctggcaggttcctgacaggaatcaagcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgatggcagcgtcgtccagtttctctatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttcccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctcta
gagaacctggccaatggcagggatactgccactctgaagttggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcagtgtcagagacgtttgaaagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttacctgagggaagctcgaagaac
cttgatgcacaaagactaaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcatcggagagccctccacccagatg
accctcaacactttccattttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggagacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctctactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggcgactcctcagct
agacaggagagtggagaaggggatggggaggaggagagcatgattgtggacgatgtgggg
aatgagggagacgctgacgcctcggatgcgaaaaggagagagaatcaggaggaagaagtg
gattatgagagtgaggagggagaggatgctgagggagaggacctggtggaggaaaaagag
gagcaggcagaggagaactctgaagaggtgcctgatgaggtgcccggtgacctggccact
gaagagcctggtggtgctggggcaaggaagaggtcgaagcagaaaagcacacacacacag
gacagcatgagggtcaacactgtgctggaaactagttccagcatcgagggctattcctat
gacagccagcagggtctctggtgtgaggttacgctcatcctgcctgtcagcaaggtgcac
tttgacctaacgtcgctggtggtggccgtggcccaaaatgcagtggtgatggagaccaag
ggcatcaccagatgtctgctcagtgaggtcactaagaaagatggctccaaggagctggag
ctcaaaactgagggcatcaacatgcacgagctgtttaaccacagtgaaattcttgatgtg
aatcggctgtactccaatgaggtccacgccatggcaaacacgtacggcattgaggtggcc
ctgagagtcattgagaaggaaattaaagatgtcttcgctgtctacggtattgaggtggac
cccaggcatttatccttggtggcagactacatgtgttttgagggcgtgtacaaacctctc
aaccgcttcgccattcagtccaactcctctccactgcaacagatgaccttcgagacgagc
tacaagttcctgaagcaggccactatgttgggctcccatgataagttggtctctccctca
gcttgcatagtggtgggtaaggttgtaaaaggagggactgggatctttgatctgaagcag
ccattgcaataa
DBGET
integrated database retrieval system
