KEGG   Oncorhynchus nerka (sockeye salmon): 115129278
Entry
115129278         CDS       T07952                                 
Symbol
rnf4
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:one04121]
    115129278 (rnf4)
Enzymes [BR:one01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     115129278 (rnf4)
Ubiquitin system [BR:one04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    115129278 (rnf4)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_2 zf-C3HC4 zf-RING_5 zf-RING_UBOX zf-C3HC4_3 zf_RING_Vps8 Prok-RING_4 zf-RING_4 zf-rbx1 RING_XB3-XBAT31 zf-C3HC4_4 TerY_C zf-UDP zf-RING_11 IBR_1 zf-Nse zf-RING_10 Zn_ribbon_6 zf-RING_16 DZR C5HCH Rtf2
Other DBs
NCBI-GeneID: 115129278
NCBI-ProteinID: XP_029515312
LinkDB
Position
LG5:complement(3945366..3948766)
AA seq 188 aa
MSSTTQRKRRTGAPSSSRRTAKSSRVTTTMPLRAAAAAETIAVLESSRTSSEEVVDLTCE
GSESTVVDLTNNDSVVVVDEGLQGRRGLGGESYVLSSDEEGDTNGSLSADLLSSLQASSR
ARSTPGTVSCPVCMDSYAEIIESGRLVVSTKCGHLFCSQCLRDSLSRSHTCPTCRKKLTH
RQYHPIYI
NT seq 567 nt   +upstreamnt  +downstreamnt
atgagcagtacaacacagaggaagagaaggactggagccccctcaagttccagacgcaca
gccaagagtagcagagtcaccaccactatgccacttcgtgcagcagccgctgctgagacc
attgctgtgctggagagcagtaggactagcagtgaggaggtggtggacttgacatgtgaa
ggttctgagtcaactgtggttgacttgaccaacaatgattctgtggtggttgtcgacgaa
gggcttcagggcagacgtggacttggcggtgagagttacgtgctgagcagtgatgaggag
ggggataccaatgggagcctcagtgctgaccttctatcttctctacaggccagcagtaga
gccaggtctacgccaggtacagtcagctgcccagtgtgtatggactcctatgctgagatc
attgaaagtggcagactagtggtctctacaaaatgtggtcaccttttctgcagtcagtgc
ctccgcgactcactgtcgagatcccacacttgcccaacctgcagaaagaaactgacccac
aggcaataccaccccatatacatctga

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