Oncorhynchus nerka (sockeye salmon): 115129477
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Entry
115129477 CDS
T07952
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115129477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115129477
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
115129477
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115129477
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
ATP_bind_1
AAA_16
MMR_HSR1
AAA_22
CbiA
Motif
Other DBs
NCBI-GeneID:
115129477
NCBI-ProteinID:
XP_029515720
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All DBs
Position
LG5:complement(13261611..13265886)
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AA seq
445 aa
AA seq
DB search
MATEGPEKTGEEAAGAGAGAGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSE
LNRNKKYTFPPGSKIAVFTWQGCSVSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAE
RDNERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCI
ERPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRREARDDKIREYFYGFRGVSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVTPGRDLTHHVLSVSCADEGEEVAGGVRRGLLESPVCGFIVVTNVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagggcccagagaagactggtgaggaggctgcgggggctggggcgggtgct
ggtgggggggggacgaggttcgacctggagaaagagacagagctgcggttcgaggtggag
gctggggagaaggtgcagctggagctgctcacgggattggctgaagtctttggttcggag
ctcaaccgcaacaagaagtacacgttccccccgggctccaagatcgctgtgttcacctgg
caaggctgcagtgtttctctctcggggaagacagaggtggcgtacgtatcaaaggacaca
cctatgctgctctacctgaacacccacgccgcactggaacagatgagacgacaggcggag
agagacaacgaaaggggcccgcgggtgatggtggtggggcctacagacgtggggaagtcg
acggtgtgcaggctgttgctgagctacgctgtcagactgggcaggaggcctacactggtg
gagctcgacgtgggccagagtggggtgtcagtcccgggcacaatgtcagcgctgtgtatt
gagcgtcccgctgacgtggaggaggggtactcagtacaggctccgctggtctaccacttt
ggctccaccacaccaggaaccaacatcaaactctacaacaagttgacatcatgtctggct
gaggtgttctcccagcgctgtgaggtgaacaggaaagccagtgtgggcggctgcatcatc
aacacctgtggatgggtaaagggttctggctaccaggccctggtccactgcgcctcagcc
ttcgaggtggatgtggttctggtgctggaccaggagaggctctacaatgagctgaagcgg
gacctgccgcatttcgtccgagtcgtgctgttacccaaatccggaggggtcgtggagcgc
tccaaagactgccggcgcgaggctcgggacgacaagatccgggagtacttctacggtttc
cgcggtgtctcgttctaccctcacgccttcgacgtgcgcttttctgacgtgcgcatctac
aagatcggagcgccatccatccccgattcgtgccttcctctggggatgtcgcaggacgat
acccagctgaagcttgtccctgtgaccccaggtcgcgatctcacacaccacgtactgagc
gtaagctgtgccgatgagggggaggaggtggctgggggggtgcgcaggggcttgctggag
agcccggtgtgtgggttcattgtggtgactaacgtggacacacaggcacaggtgatgact
gtgctctcgcccgccccaagacccctccccagacacacactgctcatcatggacattcgc
tttatcgacctcaaatag
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