Oncorhynchus nerka (sockeye salmon): 115129498
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Entry
115129498 CDS
T07952
Name
(RefSeq) TBC1 domain family member 2A-like isoform X1
KO
K20165
TBC1 domain family member 2A
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115129498
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
115129498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
PH
PH_8
PH_alsin
PH_11
KIF21A_2nd
PH_3
Motif
Other DBs
NCBI-GeneID:
115129498
NCBI-ProteinID:
XP_029515769
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All DBs
Position
LG5:complement(13931829..13956103)
Genome browser
AA seq
1008 aa
AA seq
DB search
MEGEGPEGNPIAASSHSLPLQAEAVSPADDDGDDCISTLGTGSTEETATHTNSMGQPSQD
HQTEEVPAKTATTDNSQSQAFLTQSATTTDDQAQQQPTESLSNSKLCGYLLKQGGPLKTW
KSRWFTYEVKKRQLFYYRTALDVTSLGRIQLCSATLGYPLQGEQGTFHIQTPERIFVLKA
ANQEAMMYWLQQLQLKRWQHRDQLTGESTSHCTDHKRPEGQGELPTTCTDYFLPKVKTPP
GLIGEEAANLPAPPQRNPLSNFSIKHPLIEIQNSVHSLFSKRSSLERSRSVFHVEVPLPW
NPLNPSKTPSQTAHNRLECIGPRTSVDPLTPTPLLLLVDPRDQLSPVEGRSCPLPSPSPR
SRKKTRGSCATMPAVLREAPSESADRTTCLQHEKHILDEDVKAQKELVWLLHKALEVAQL
EKRTCTEFLAAEGEQERLELLRHYERHAADLRGRLLELKAEGEDLRTSLAQRDAHVAELQ
ENVTLMRKKNHAKQEVILKLLEKVSACLADPTRTVSTTNGLEAQTFRQLNEDTENLKDDI
EAYKIQNKFLNSEIYQLTKLWLNSSEQEKSLMVKCAYLEARNCQIESRYLGVLGKLQENK
VLEPGQREAVRKLQGEDPLQGDLNDVLKLNPVREHDEYGFKIIPDYEVEDIKLLAKIQAQ
EIRSHSLLRQEAGDRLLLGRWAQYLGGRPADNLCPSSELKSLLRGGVPCEYRPRVWRWVV
RVRTRALWERHPDRYQQLCQKSLTSPHQASRQIQLDLYRTLTTNQHFSSPSSPALQQLQR
ILLAFSWQNPTIGYCQGLNRLAAIALLVLESEQDAFWCLVAVVEAIMPQDYYTKTLISSQ
ADQCVLKDFMAEKIPRLAAHFEEHSVDVSLITFNWFLVVFVESLPSDILLRVWDAFLYEG
TKVIFRYALALFKYKEEDILKIHDSVEIYQYLRFFAKTISDGRKLTNIAFSDMNPFPMKL
LRNRRALHLERLQGELRELEAQQREFVTESAQRKDLDTILVSEDDEEL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggagggagagggcccagaaggaaatcccatcgctgcctcgtctcactcacttcctctg
caagcagaggcggtaagcccagcggatgatgatggtgatgattgtatctcaacactgggg
actgggagcactgaagaaaccgctacacacacaaacagcatgggccagccgagtcaagac
caccagactgaagaggtcccggctaagaccgctaccacagacaacagccagagccaagca
ttccttactcagtccgccaccaccacggacgaccaagcccagcaacaacccacggaaagc
ctgtctaacagtaaactctgtgggtacctccttaaacaaggaggtcccctgaagacatgg
aagtcgcgctggttcacgtacgaggtgaagaagagacagttgttttactacaggacggcg
ctggatgtgacctctctggggagaatccagctgtgcagcgccacgctcggataccccctc
caaggagagcagggcacctttcacatccagacccccgaacgcatctttgtcctcaaggca
gctaaccaggaggccatgatgtactggctacagcagctgcagctgaagagatggcagcac
cgagaccagctgacaggagaatccacaagccactgcactgaccacaagagaccagaggga
cagggggaactacccaccacctgcacagattacttcctgcccaaggtgaagaccccgcca
ggcctcataggcgaggaggccgccaatcttcccgcgccaccacaacggaaccccctaagc
aacttttccatcaaacaccctctgatagagattcagaactcagtgcacagtctgttttcc
aagcggtcctccctggagcggagtcggagtgtgttccatgtggaggtgcctcttccctgg
aacccactgaacccctcaaagactccctcccagacagcccacaacaggcttgagtgtata
ggtcctaggacttccgttgaccccctgacccctacacccctgctgctgttggtggacccc
agggaccagctctcccctgtagagggcaggtcgtgcccattgccgtccccatccccgagg
agcaggaagaagacgaggggaagctgtgccaccatgcctgcggtgctccgggaagctcct
tcagaaagcgcagacaggacgacctgcctccagcacgagaagcacatactggatgaggac
gtcaaggcccagaaggaactggtgtggctcctacacaaggccctggaggtggctcagctg
gagaagcggacgtgcacagagttcctggcggccgagggcgagcaggagcgcctggagctg
ctgaggcactacgagcgtcacgccgctgacctacgaggccgcttgttggagctgaaggcc
gagggggaagacctgagaacgagcctagcccagagggacgcccacgtggccgagctgcag
gagaacgtgaccctgatgaggaagaagaaccacgcaaaacaggaagtgatcctgaagctg
ttagagaaggtgtcagcctgcttggccgaccctacacgcacagtgtccaccaccaacggc
ctggaggcccagaccttccgccagttaaatgaggacacagagaacctcaaggatgatatt
gaggcctacaagatccagaacaagttcctgaactctgagatctaccagttgaccaagcta
tggctcaacagttccgagcaggagaaaagccttatggtgaagtgtgcatacctggaggct
cgtaactgtcagatagagagtcgttatctgggcgtattggggaagctgcaggagaacaag
gttctagaaccgggccagcgggaggctgtgaggaaactacaaggagaggacccactacag
ggagacctgaatgacgtgctcaaactcaaccctgtcagggagcacgacgagtacggcttc
aagatcatcccagactacgaggtggaggacataaaactgctggccaagatccaggcccag
gagatccgctcccacagcctgctgaggcaggaggccggggacagactcttgctgggccgc
tgggctcagtatctggggggccgcccggccgacaacctctgcccctcttcggagctcaaa
agccttctgcggggcggcgtgccgtgcgagtaccgcccacgggtgtggcgctgggtggtg
agggtgcgcacacgcgcgctatgggagcgccacccagatcgctaccagcagctgtgccag
aagagccttacatcgccccaccaggcctccagacagatccagttggacctgtaccgcact
ctcaccaccaatcagcacttctcctcaccctccagccccgccctgcagcagctccaacga
atcctgctggccttctcctggcaaaaccccaccatcggctactgccagggcctcaacagg
ctggcagccatagctctcctggtgctggagagtgagcaggatgccttctggtgtctagta
gctgtggtggaggccatcatgccccaggactactacaccaaaacgctcatatcctcgcag
gcagaccagtgtgtgctaaaggacttcatggctgagaagataccccggctggcggctcac
tttgaggagcatagcgtggacgtgtccctcatcactttcaactggttcctcgtggtgttc
gtagagagcctgcccagcgatatcctcctgcgagtgtgggacgccttcctctatgagggt
accaaggtgatatttcggtatgccctggctctgttcaagtacaaagaggaggacatcttg
aagatccatgacagcgtggagatctaccaatacctgcgcttctttgccaagaccatctct
gacggcaggaagctgaccaacattgccttcagtgacatgaacccgttccccatgaagctg
ttgaggaaccggcgtgcgctgcatctggagcgcctgcagggggagctcagagagctggag
gcccagcagagagagtttgtcacagagagcgcacagcgcaaggacttggacactatactg
gtcagcgaggacgatgaggagctgtag
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