Oncorhynchus nerka (sockeye salmon): 115129506
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Entry
115129506 CDS
T07952
Name
(RefSeq) nuclear cap-binding protein subunit 1-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115129506
09122 Translation
03013 Nucleocytoplasmic transport
115129506
03015 mRNA surveillance pathway
115129506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115129506
03041 Spliceosome [BR:
one03041
]
115129506
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
115129506
Spliceosome [BR:
one03041
]
Common components
Common spliceosomal components
Cap binding complex
115129506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
AAA_13
Vfa1
RRF
GBP_C
EMC3_TMCO1
DUF1281_C
Afi1
FapA
tRNA_bind_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
115129506
NCBI-ProteinID:
XP_029515781
LinkDB
All DBs
Position
LG5:complement(14343806..14351263)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggaggccaatctcacaaaagaaggaga
acgtctgagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaattacaaaaacaaaatcctccgcattttgtgtgctgtggctcgacttctaccc
gagaagctgacagtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatccgacaactcaaagagaccttgaaggccaacctg
tacaccgaagcgctttacctagtgcgcttcctctgtgacctggtgaactgccatgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccacaggtgcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggacgtggagatggacaggctcctaaaccagattgac
ggttacctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacattgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacccttcaccccacctgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccccgagggt
cccgtcatgccaggcagccactctgtggagaggtttgtgattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtcccgcccactttctcagccctcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggatatgccgtg
gccataacggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgatgatgagggtgagggcttcaac
cccctaaagatagaggtgttcctgcagactctcctccatctcgctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagattctgaaggtcctgacggactgtgac
gagggcaagctgcacatcctccgggtggtctacgaggtctggcggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtagattgtgcagctgtagcc
aactggctcttctccccaaacatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggcgatgag
gaggacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcaacagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcaccgccgagctt
gaccaccacatcctagctgtttaccagcagttctgtgccctgcagctctga
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