Oncorhynchus nerka (sockeye salmon): 115129556
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Entry
115129556 CDS
T07952
Symbol
rapgef2
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04517
IgSF CAM signaling
one04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115129556 (rapgef2)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
115129556 (rapgef2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115129556 (rapgef2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
115129556
NCBI-ProteinID:
XP_029515878
LinkDB
All DBs
Position
LG5:19154950..19302208
Genome browser
AA seq
1673 aa
AA seq
DB search
MASYVDNSFRQAVMMNPAERTQQDLEIVYSYLHGMEALSNLREHQLRIICETVRYERHEA
NEVLYYPDDVGSCWFILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMDQNEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPTGKPPIARGYHTECIKA
QLPADFSRLHLADGLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATENEPGDMDLSGLP
ETAVDSEEDDDEEDMERASDPLMSRDVVRDCLEKDPMDRTDDDIEQLLEFMHQLPAFANM
TMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPEGRPEILCMGNSF
GVSPTMEKEYMKGVMKTKVDDCQFVCIAQQDYCCILNQVEKNMQKVEEEGEIVMVKEHRE
LDRTGTRKGHIVIKGTTERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMVVGKKLLEW
FHDPSLRDKVTRVVLLWVNNHFNDFEGDPAMTHFLEEFESNLEREVRVSKMCGHLRLLNI
ACAAKAKLRLVTLTKPSREAPLAFTLLGGSEKGFRIFIDSVEPGSKASEAGLKRGDQILE
VNGQNFENVQLTKANEILRNNTHLSISVKTNLLVFKELLARPEHDHEAEGEDPPEVDRKN
GAPAHLPKIGDIKKGSRYSIPDLAVDVEQVMGLEKASKKAKANTVGGRNKLKKIFDKTLT
SILPPKPYNDVGVGQSQDDSIVGLKQSKQIPASLPVSSNLSSSNPDLLQSHHRILDFNNQ
PDMSDQVLRVFKADQQSRYIMIGKDTTAKEVVAQAIREFALTAVPEAYSLCEVSVTPEGV
IKQRRLPEQLSKLADRIQLSGRYYLKSNMETETLCSDEDAQDLLREGQISLLQLSTVEVA
TQLSMRAFELFCAIEPTEYIDDLFKLKSKTGSFCLKRFEEVINQETFWVASEVIREPNQL
KRMKIVKHFIKIALHCRECKNFNSMFAIISGLNLAPVSRLRGTWEKLPSKYEKLFGDLQD
LFDPSRNMAKYRNVLNNQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAK
EIRHVGRMASVNMDPALMFRTRKKKWRSLGSLSQGSANAAVLDVTQTGGHKKRVRRSSFL
NAKKLYEDAQMARKVKQYLSNLSLETNEEALQTLSLQCEPSINTLPKNAGGGKRPDTSPV
VSRAASQQRGQLQKGNQALQVPAVALYPSRKKVPVKDLPPFGTSSPQSLKKILSLSEEAS
ERHKRQTEDTVSNASSQLSSPPTSPQSSPRKGLGTLKGQSVRKVTFTSKQTGYPRTGDTY
SDSGHSEISSRSSLVSNSSFDMAQEERRGLRHSGGVGDPHAGGVRLERRATTDPDQYSLG
SYSSMQDCRGLYACAMVLSSPSSEELTQDQGDRVSLDAADSGRGSWTSCSSGSHDNIQTM
QQGRSWETLAFGPGGVIGGSIGVHPPGGPEALLGGTAGLWASQARGSWASASSSSSAAYW
GEDSEGDTGTIKRRGGKDVNTDPETSSITSMGSDEAKQHGRPSPSPITAGNKGLITRKES
RYREPPPTPPGYTALTISDFSEGQTQSPPTAPAHSGRRPPDYTTALQRSRMVTQSPDSHH
QAQQHAKRQGLHRTRSPGEEEEPEEEEEGESLSPKLVALRKTVAHTTPETTRP
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttatgtcgataacagctttcgtcaagctgtgatgatgaatccggcagaaaga
acgcaacaggacctggagatagtctactcctatcttcacgggatggaggccctttctaac
ctccgagaacaccagctgaggataatatgtgagacagtgcgctatgaaagacacgaagcc
aatgaagtgctctactacccggatgacgttggaagctgctggtttattctactgtccggg
tccgtcttcatcaaggagtccatgttcctgccaagaagcagttttggaaagcgttctgca
gggagcctgagacgcggatgcgagtgcatcgttctggaaccttccgagatgattgtggtg
gactatatggaccaaaatgaggagtacttccagcggcaagcatcgcaccgacagtcccgc
cggaggttccgcaagatcaaccagaagggtgagcggcagaccatcatcgacacggtggac
ccgtaccccaccggcaagccgcccatagccaggggataccacacggaatgcattaaagct
cagctccccgcggacttcagtcgactccacctggccgacggcttgcacccacaggtgacc
cacgtttcttccagccactcaggatgtagtatcaccagcgactctggaagcagcagcctg
tcagacatataccaggccacggagaacgagccgggcgacatggacctcagcggcctgccc
gagaccgccgtcgactcagaggaggacgacgacgaggaggacatggagcgagcgtcggac
cccctcatgagccgcgacgttgtgcgggactgcctcgagaaggaccccatggaccgcacc
gatgacgacatagagcaattgctggagttcatgcatcagctgccagcgtttgccaacatg
accatgtcggtgaggagggagctgtgtgccgtcatggtctttgccgtggtcgagcgggcc
ggcaccatcgtcctcaacgacggggaagagctggactcgtggtcagtgatcctgaatggc
tcggtggaggtgacgtaccctgagggcaggcctgagatcctgtgtatggggaacagcttt
ggggtctcccccaccatggagaaggaatacatgaagggagtaatgaagaccaaggtggac
gactgtcagtttgtgtgcatagcgcagcaggactactgctgcatcctcaaccaggtggag
aagaacatgcagaaggtggaggaggagggcgagatcgtcatggtcaaggagcaccgtgag
ctggaccgcaccggcaccaggaagggacacatcgtcatcaagggtacgacggagcgtctg
accatgcacttggtagaggagcactcagtggtggaccccacctacatcgaggacttcctg
ctgacctacagaaccttcctctccagccccatggtcgtgggcaagaagctcctcgagtgg
ttccatgacccaagcctcagggacaaggttacacgggtagtcttgctatgggtgaacaat
cacttcaatgactttgaaggcgaccccgcaatgactcactttcttgaagagttcgaaagc
aatctggagagagaggtccgtgtctcaaaaatgtgcggccatcttagactgttaaacatt
gcctgtgctgctaaagccaaactgcgtctcgtgacactgaccaagccgtcgagggaggcc
ccgctagccttcaccctgttggggggctctgagaagggcttccgcatcttcatcgacagc
gtggagcccgggagcaaggcctcagaggccggcctcaaacgaggagaccagattctggag
gtgaatgggcagaactttgaaaatgtccagctcaccaaagccaatgagatcctgaggaac
aacacccacttgtccatttctgtgaaaaccaatcttttagtgttcaaggagctactagcc
cggccggagcacgaccacgaggcagagggtgaggatccgccagaggtggaccgcaagaat
ggagccccggcacacctacccaagattggggacatcaagaagggctcgcgctactccatc
cctgacctggcggtggacgttgagcaggtgatgggcctggagaaggccagtaagaaggcc
aaagccaacacggtgggaggaaggaacaagctcaagaagatcttcgacaagacgctcacc
agcattctgcccccaaaaccatacaacgatgtgggcgtgggccagtcgcaggacgacagc
atcgtgggcctgaagcagtccaagcagattccggcctcgctgcctgtcagcagcaaccta
tcgtccagcaaccctgacctgctgcagtcccaccaccgcatcctggacttcaacaaccaa
ccggacatgtccgaccaggtgctgcgagtgttcaaggcagaccaacagagtcgatacatc
atgattggtaaggacaccacggccaaggaggtggtggcccaggccatccgggagttcgcc
ctgaccgcggtgcccgaagcctattcgctgtgcgaggtgtccgtcacgccggagggtgtc
atcaagcaacgacggctaccagagcagctgtccaagctggctgataggatacagctcagt
ggcagatactacctgaagagcaacatggagacagagacactctgttcagacgaggatgcc
caggaccttcttcgtgaaggccagatctccctcctccagctctccactgtggaagtagcc
acgcagctctccatgcgtgccttcgaactcttctgcgccatcgagcccaccgagtacatc
gatgacctgttcaagctcaagtccaagacgggctcgttttgcctcaagcgcttcgaggag
gtcatcaaccaggagacattctgggtggcgtcggaggtgatcagggagcccaaccagctt
aagcgcatgaagattgtcaagcacttcatcaagattgctctccattgtagagagtgcaag
aacttcaactccatgttcgctatcatcagtggtctgaacctggccccggtatctagactc
cggggcacgtgggaaaagctccccagtaagtacgagaagctgtttggggacctgcaggac
ctgtttgacccgtccagaaacatggccaagtaccgcaacgtgctcaacaaccagaacctc
cagccacccatcatccccctgtttcccgtcatcaagaaggacctcaccttcctgcatgaa
gggaacgactccaaagtggacggcctggtgaactttgagaagctgcggatgatcgccaag
gagatccgccacgtgggtcgcatggcctccgtcaacatggaccctgcgctcatgttcaga
accaggaagaagaaatggaggagtttagggtctcttagccagggcagtgccaacgcggcg
gtgctagacgtcacccagacgggcgggcacaagaagcgggtgaggcgcagctccttcctg
aatgccaagaagctgtacgaggatgcccagatggcccgcaaggtcaagcagtacctgtcc
aacctcagcctggagaccaacgaggaggcgctgcagaccctctcgctgcagtgtgagccc
tccatcaacacactgcccaagaacgctggtggcggtaagaggccagacacgtctccggtg
gtgtccagggctgccagccagcagaggggccagctgcagaagggcaaccaggcacttcag
gtgcccgctgtggccctctacccctcccgcaagaaagtgccagtcaaggacctgccacca
ttcggcacgagttcccctcagtcgctgaagaagatcctatcgctgtcggaggaggccagc
gagcgtcacaagcgtcagacggaggacacggtgtctaatgcctcctcgcagctctcctcc
cctcccacctccccccagagctcgcccaggaaggggctcgggacactgaagggccaaagt
gtccggaaggttacctttaccagtaaacagacaggctacccaagaacgggagacacctac
tcggactcgggtcacagcgagatttcgtcgcgctccagcctggtcagcaactcctccttc
gacatggcccaggaggagaggagggggctcaggcactcaggaggggtgggagacccccac
gctggaggggtgcgtctggagaggagggctacgaccgaccctgatcagtacagcctcggt
tcctactcgtccatgcaggactgccggggcctgtatgcctgcgccatggtgctctcctcc
cccagctcagaggagttgacccaggaccaaggggaccgtgtctccctggacgccgccgat
agcggccgcggctcctggacctcttgctcctcgggctcccatgacaacatccagaccatg
cagcagggacgtagctgggagaccctggcctttggaccggggggtgtcatcggcgggagc
attggtgtccacccacccggggggcctgaagcattactagggggcaccgctggactgtgg
gcgtcccaggctagaggtagctgggcatcggcctcttcatcttcctctgcggcgtactgg
ggcgaggactccgagggcgacacgggcacgattaaacggcgaggcgggaaggacgtgaac
accgacccggagacgagtagtatcacatcgatggggtccgacgaggccaagcagcacgga
aggccttcgccatcacccatcactgccggaaacaagggccttatcacgcgaaaggagagc
cggtaccgcgagccccctccaaccccgccgggctacactgccctgacaatctctgacttc
agcgaagggcagacgcagtcgccgcccacagccccggcccactccggccgccgcccgccc
gattacaccacggccctgcagcgctcgcgcatggtcacccagtcgcctgactcccaccac
caggcccaacaacatgccaagcgccaagggctccaccgcacccgctcgccaggcgaggag
gaagagcctgaggaggaagaggagggtgagtccttgtctcccaaactagtcgctctgagg
aagacagtggcacacacaacaccagagacaaccaggccatga
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