Oncorhynchus nerka (sockeye salmon): 115129582
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Entry
115129582 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4B-like
KO
K10609
cullin 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03420
Nucleotide excision repair
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115129582
09124 Replication and repair
03420 Nucleotide excision repair
115129582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115129582
03400 DNA repair and recombination proteins [BR:
one03400
]
115129582
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115129582
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
115129582
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
115129582
TCR (transcription coupled repair) factors
Cul4-CSA complex
115129582
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115129582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
DUF3292
PG_binding_4
Motif
Other DBs
NCBI-GeneID:
115129582
NCBI-ProteinID:
XP_029515967
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All DBs
Position
LG5:21371197..21387334
Genome browser
AA seq
857 aa
AA seq
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MESLVEGLPSPNPPPPTQEARPAASDVNNDSSSITNSKKRKINRSEREDIDSISSSPKTH
NSSSSSTSQQIQKKLRFEDSVDFIGLDVKMAEESSSASCSSNKTKTVFLAGVVGHHANGL
TKTAGSTTFSSSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKEAVEAIQNSTSIKYNL
EELYQAVENLCSHKISARLYKQLRVVCEDHIKAQIDQFREDVLDSTLFLKKIDNCWQDHC
RQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDMKVQSKTIYGILLLIERE
RSGETIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVPEYLHHV
NKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTSTLQKGLNHLLDENRIQDLCLLY
QLFSRVRGGVLVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFIKN
EKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELEKMLDKIMIIFRFI
YGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKD
IMVQFKQCQNIPGNIELTVNILTMGYWPTYIPMEVHLPAEMVRLQEIFKTFYLGKHSGRK
LQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLEEIKLATGIVPIEKDG
ELRRTLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKETVEEQA
STTERVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDR
DYMERDKENPNQYNYVA
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgcttgtagaaggtttaccttcccctaatcccccaccgccaacccaagaggct
agaccagcagcttcagatgtaaataacgacagcagtagtatcacgaattcgaagaagagg
aaaataaaccggtcagagagggaagacattgattcaatatcgtcatctcctaaaacccac
aattcctcttcgtcctccacttcgcaacaaatccagaagaagttgaggttcgaagattcc
gtagacttcataggactggatgtgaaaatggctgaggagtcgtcatctgcatcgtgttct
tcaaacaaaaccaaaacagtttttttggctggggttgttgggcatcatgcaaacgggctg
acgaaaactgcaggctccactaccttctccagcagcaaacctggagctgcaaagaaacta
gtaatcaagaactttaaagaaaagcccaaattgcctgagaactacacacacgagacctgg
caaaaactaaaggaggcggtcgaggccattcaaaacagcacttcaatcaagtacaatctt
gaggaactctaccaggctgtcgagaacctctgctcccataagatatctgccaggctctac
aaacagctacgggtggtttgtgaagaccacatcaaggcacaaatcgatcaattcagagag
gatgtactggacagtaccctcttcctgaagaaaatagacaactgttggcaagatcactgc
agacaaatgatcatgattagaagtatatttttgttcttggaccgcacctatgttttacaa
aactcaatgctcccatcaatctgggacatgggcctagagttgtttaggttttacataatc
agcgacatgaaggtccagagcaagaccatctacggcatcctgctgctcatcgagagggag
cgcagcggcgagaccatcgaccgcagcctgctccggagcctactgagcatgctctctgac
ctgcagatttatcaggactcctttgagcagcgctttctggaggagactaatcggctgtat
gctgctgagggacagcgactgatgcaggagagagaggtcccagagtatctccatcacgtc
aacaaacgcttagaggaggaagcggacagagtcatcacgtatctagaccagagcacacaa
aaacctctcattgccactgtggagaagcaactactgggtgaacatctcacttcaactctg
cagaaaggcttgaatcacctgctagatgagaacagaatccaggacttgtgtcttctctat
cagcttttcagtcgtgtgagagggggcgtactggttcttctacagcattggatcgagtac
atcaaggcctttggaagtacgatcgtcattaaccctgagaaggacaagaccatggtacag
gagctcctggacttcaaggacaaggtggaccacatcatcgacatctgcttcataaagaac
gagaagtttgtcaatgccatgaaggaggcttttgagaccttcatcaacaagagaccaaac
aaacctgctgagctcatagcaaaacacgtggattcaaagcttagggcgggtaacaaggag
gcgacggacgaggagctggagaagatgttggacaagatcatgatcatcttccgattcatt
tatggcaaagatgtttttgaggcattctacaagaaagatctggccaagaggttgctggtg
ggaaagagtgcctccgtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgt
ggagcagcattcaccagcaagctggaaggcatgttcaaggacatggagctttccaaggac
ataatggtgcagttcaaacagtgtcaaaacatccctggtaacattgagctgacggtgaac
atcctcaccatgggatactggcccacctacatcccaatggaggtccatctgcccgcagag
atggtgcgactgcaggagattttcaagacattttacctgggcaagcacagcggcaggaag
ttacagtggcagtcgacgttaggccattgtgttttaaaagctgaatttaaagagggcaaa
aaagagcttcaggtttccctgtttcagacgctagtgctgctcatgttcaacgaaggggag
gaattcaccttggaggagatcaagctagctacaggaatagtgccaatagaaaaggatggc
gagctgcgacggaccctgcagtcgttggcgtgtggcaaggcacgggtcatccacaaagtc
cccaagagcaaagacgtggaggacggagacaagttctcctgcaacgatgacttcaaacac
aaactcttcaggatcaagatcaaccagatccagatgaaagaaacggtggaagagcaagcc
agcaccacggaacgagtctaccaggaccggcagtatcagatcgacgccgccatcgtccgg
atcatgaagatgaggaaaactctgagtcataatctcttggtgtcggaagtgtacaaccaa
ctcaagttccccgtaaagcctgctgacctaaagaagagaatagagtctctcattgacaga
gattacatggagcgcgacaaggagaaccccaaccaatacaactatgtggcttaa
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