Oncorhynchus nerka (sockeye salmon): 115129741
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Entry
115129741 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115129741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115129741
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115129741
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115129741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-RING_2
zf-C3HC4_3
FN3_DSCAM-DSCAML_C
zf-RING_5
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
115129741
NCBI-ProteinID:
XP_029516270
LinkDB
All DBs
Position
LG5:complement(33921508..33957334)
Genome browser
AA seq
685 aa
AA seq
DB search
MEALESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCASNEPVQSIGAFQCPTCR
YVISLSPQRGLEGLKRNVTLQNIIDRVQRAASSGPLALLPHSGPNSPSEDAGRFALALVP
ASTAMTSPGTPLSHVQCQFCEQDPPQDAVKTCVTCEVSYCDECLRATHPNKKPFTGHRLI
EPMSDCHLRGLQCLEHEEEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALSDRYEKLKQA
LDSNLSHLVKRNNELEGLMGKLIQTCQHVEVNASRQEGKLMEECDLLIDIIQQRRQIIGT
KIKEGKAVRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSITERVSMA
TASSQVLIPEINLTDTFDTFALDFTKEKKLLESLDYLTAPSPPGIREELCTASYDTITVH
WTSDDEFTVLSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNLYTVHGLQSGTKYIFI
VKAINQAGARSSEPGTLKTNSQPFKLDPKSAHKKLKISHDNLTVERDETASKKGHGQERF
TSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRCNN
SWVVRHNSKELAIEPSPHLRRVGVLLDYDAGSLTFYDAVGSQNLHTFHVSFAQPVCPVFN
VWNKCLTVLTGLPIPEHLEGLETQD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgctggagtcggagctgacttgcccaatctgcctcgagctctttgaggaccca
ctgctcctgccctgtgcccacagcctgtgcttcggctgcgcccatcgcatcctggtatcc
cactgtgcctccaacgagcccgtccagtccatcggagccttccagtgccccacctgccgc
tatgtcatctctctcagtccgcagcgtggcctagaaggactgaaacgcaacgtcaccctc
cagaacatcatcgaccgcgtccagagggccgcctcctctggccccctggccctgctgccc
cacagcgggcccaactcccctagcgaggacgccgggcgattcgccctggccctggtcccc
gcctccaccgccatgaccagccccgggaccccgctcagccacgtgcagtgccagttctgc
gagcaggacccgccgcaggatgccgtcaagacgtgtgtgacgtgcgaggtgtcatactgc
gacgagtgcctgcgcgccacacaccccaacaagaagcccttcacgggccaccgtctgatc
gagcccatgtcggactgccacctgcgggggctacagtgcctggagcacgaggaggagaaa
gtgaacatgtattgcgtcactgacgaacagctcatctgctctctgtgcaaactggtagga
agacaccgagaccaccaggtggcggccttgagcgaccgttacgagaaactcaagcaagcg
ttggattccaacctgagtcatttggtgaagaggaataatgagttggaagggttgatggga
aagttgatccaaacctgtcaacatgtagaggtcaatgcatcgcggcaggagggaaagctg
atggaagaatgcgacctcctgattgacatcatccagcaaaggaggcagatcattgggacc
aaaatcaaggaggggaaggcggtccggatcaggaagctagcccagcagatctccaactgt
aagcagtgcatcgagaggtcctctgctctcataacccaggccgaccagaccctgaaggag
acggaccacgcccgcttcctccagaccgccaagagtatcaccgaaagggtttccatggcg
accgcctcctctcaggtcctgattccagagatcaacctgacggacacgtttgacacgttc
gctctggacttcaccaaggagaagaagctgctggagagcctggactacctcacagcgcca
agtcctccgggcatcagagaagagctctgcacggcatcgtacgacaccatcaccgtccac
tggacctcagacgacgagttcacagtgctttcctatgagctccagtatgctatcttcaca
gggcaagccaacgttgtcagcctgtgtaactctgcagacagctggatgattgtgcctaac
atcaagcagaacctctacaccgtccacggcctgcagagcggcaccaagtacatcttcatc
gtcaaagccatcaaccaggcaggtgcccgcagcagtgagccagggacactcaaaaccaac
agccaacctttcaagctggaccccaagtccgcccacaagaagctgaagatctcccatgac
aacctgacggtggagcgcgacgagacggcatcgaagaagggacacggccaggagcgcttc
accagccagagtagctacggcgtcgtcggcaacgtttacatcgacagcggacgccactac
tgggaggccctgattggaggaagcacatggtatgcggtgggcatcgcctacaagtcggcc
cccaagcacgagtggattggcaagaactcggcctcctgggtcctgtgccgctgcaacaac
tcgtgggtggtgcgtcacaacagcaaggagctggccatcgagccttcgccccacctgcgc
cgcgtgggtgtcctgctggactacgacgccggctcgcttaccttctacgacgccgtgggc
tcgcagaacctgcacacgttccacgtgtccttcgcccagcccgtgtgtcccgtcttcaac
gtgtggaacaagtgtctgactgtcctcacgggtctgcccatccccgaacacctagaaggg
ttggaaacccaggactga
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