Oncorhynchus nerka (sockeye salmon): 115129751
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Entry
115129751 CDS
T07952
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115129751 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115129751 (bard1)
04121 Ubiquitin system [BR:
one04121
]
115129751 (bard1)
03036 Chromosome and associated proteins [BR:
one03036
]
115129751 (bard1)
03400 DNA repair and recombination proteins [BR:
one03400
]
115129751 (bard1)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115129751 (bard1)
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115129751 (bard1)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115129751 (bard1)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115129751 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
115129751
NCBI-ProteinID:
XP_029516305
LinkDB
All DBs
Position
LG1:complement(33530763..33560059)
Genome browser
AA seq
825 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGEGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAVVPLPEVGSGTVKAAPRHPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRATNYEKKKATKKTRNGGGVRKPAAGGGQKPTKHEETKQNVKTQRLEAINQ
QWGFAGAREGDVGEEEEQVTAEEGEHRSSKRVSFQSPATLPATAEPQTEDLPQGNTIILS
PSRSILKVVQPGENVPLSEDQDGPSPHTTPSQLDKISAKQHSKPNEEITKKPDLPSPPKR
TPKRFCVEDKNISQCTPKKPKTSPGQGRRPAVDRVALPAMHTSPSPAACPRPGRTSTSTR
ISREGEQQWGSSPCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKEL
LDQGADPNLKDNAGWTPLHEACNLGHLGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNGH
TGIAMLLLHHGASQSVLNMFGLRPVDYAVSPEMQAILLAASEGPHPVNSPLSPSPSLNKA
SEGVRLEEQAIVLGSKLSQSQQTRLAKLGHLLGGKRADAFSCSVTHVVVPDGPMPTTLST
LLGLLNGCWVLNFSWVEACLQADSWISESDHEAGAGPQRSRINRHSLLPPLLDGCFFYLM
GSFKKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASLGSDQALCTQYIIYD
PQGSYRPPRVRLGKVWSAPSTWVVNCISAFQLLPVPELESDTPGV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcaccgacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctc
ggggtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaggctggagagggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctccgattactcc
gatgcccttcccattacaccaccagcacagtctgataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggttgtgcctctcccggaggttgggagtgggactgtgaaagctgctccaagacatcct
gagacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcctcctctcctcaaagggcgactaactatgaaaagaagaaagcgact
aagaagacgagaaatggtggtggtgtcaggaagcctgcagctgggggtgggcagaaacca
accaagcatgaagaaaccaagcagaatgtcaagacacagaggctggaggcaatcaaccag
cagtggggctttgccggagcgagagaaggagatgtcggagaggaagaagagcaggtcact
gcagaggaaggagagcacaggtctagtaaaagagtttccttccaaagtccagccaccttg
cctgccactgcggagcctcagacggaggatctccctcaggggaacaccataatcctcagc
cccagcagaagcatcctgaaggtggttcagccaggagagaacgtcccactctctgaggac
caggacggtccaagcccacacaccaccccttctcagctggataagatatctgcaaagcag
cactccaaaccaaatgaagaaattactaaaaagcctgacctgccctcccctcctaagcgc
actcccaaaagattctgtgtggaagataaaaacatctcacagtgtaccccaaagaaaccc
aagacatctcctggccagggtagacgtccggcagtggacagggttgcactcccagccatg
catacctcgccctcccccgctgcctgccccagaccgggtcgaacctccaccagcaccagg
atatccagagaaggagagcagcagtggggcagtagtccgtgttcccccgcccccctgggg
aagagatccccgggcagactgtcacagaacagcccagcggtagtgaagagaaaccacaag
ggggagacacccctacacctggcagcaataaagggtgatgtggagacagtgaaggagctc
ctagaccaaggggctgaccccaacctgaaagacaatgctggatggacaccgctgcacgag
gcatgtaacctgggccacctgggtgtagtggaggtgttggtggagaggggaggcgtgctg
ttgaacacaccaggctacaagaacgattctcctctacacgacgctgtcaggaacggacat
actggcatcgccatgctactgctgcatcacggggcttcacagagcgtcttgaatatgttt
ggccttcgccctgtggactatgccgtgagcccagagatgcaggcaatccttctggcagcc
tctgaaggaccccacccagtcaactcacctctcagtccttcacccagcctcaataaggcc
agtgaaggtgtgagactggaggaacaggcaattgtactgggcagtaaactgtcccagtct
caacagacccggctggccaaactgggacatctcctgggaggaaagagggcagacgccttc
tcctgctctgtcactcatgtggtggtaccagacgggccgatgcccaccacgctgtccact
ctccttggcctcctgaacggctgctgggtcctcaactttagctgggtagaggcgtgcctg
caggcagatagctggatctccgagagtgaccatgaagcaggagcaggaccgcaacgcagc
cgcattaacagacacagcctgctgcccccgctgttggacggttgtttcttctacctcatg
ggctccttcaagaagccccccagggacgagctcctccagctggtgagagaggcagggggc
cagattcttacccgacagcccaaaccagacagtgatgtgacccagaccctgtctgctgca
gcctaccacgcctctctgggctcagaccaggccctgtgtacccagtacatcatctatgat
ccccagggctcttacaggccacccagggtgaggttaggaaaggtgtggtcagctccatct
acatgggttgtaaactgtatatcggccttccagctactgccagtgcctgagcttgaatca
gacacacctggtgtgtaa
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