Oncorhynchus nerka (sockeye salmon): 115129980
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Entry
115129980 CDS
T07952
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115129980
Peptidases and inhibitors [BR:
one01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
115129980
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
115129980
NCBI-ProteinID:
XP_029516631
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Position
LG5:35011461..35047910
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AA seq
1218 aa
AA seq
DB search
MSPSLYWILLLCRLHSLWAQDDYSTHDDRTMDRRAKNQLLTTNVIPKNGQSLLNDDCGLE
LAFLVDSSESAKDNHAQEKRFATDVVERLQGVNLQTGRALSSRAALLQFSSHVIIEQTFK
QWRGLANFKAHIAPIGYIGHGTYTTYAITNLTKIYMEESEPGSIRVAILLTDGISHPRNP
DIFSAVVDAKNQGVKFFMVGITPAANDISNVAQLRRLASSPANRYLHNLQDRGIVEKVIK
EITELADEGCPLALKCACDKGERGPIGLQGKKGNSGDDGNPGVKGSKGEGGLSGLPGRNG
EEGKPGYKGEQGESGECGTPGIKGDRGPEGPVGTRGNRGLQGLPGPHGDAGPEGLIGKKG
ERGHSGPPGIQGETGIGLPGHKGDVGFQGRLGPPGPPGLGEPGLPGPQGPQGVQGEKGPI
GEGFAGPKGDRGLEGPRGPRGQPGAGLKGDKGGFGPPGFPGPVGLPGLGIQGEKGIEGPR
GPPGGRGPQGDGYPGPKGDQGLPGELGSTGERGAGEPGAKGEPGASGLAGFPGLPGEDGA
PGQKGEPGVGGLRGPEGAAGIGTQGEKGDQGQRGIRGLGGPPGIAGPSGAKGEPGTPGRL
GMPGLPGRGIIGPKGNLGPPGPSGPIGETGYGLPGPKGDRGGPGPSGPFGPKGDGYPGTT
GTPGLPGLPGEPGLEGLGIPGPKGDIGFRGFPGLAGPPGEGLQGLPGGIGRLGPPGPTGP
PGQGIQGPKGEAGSQGVTGPRGPPGEGFTGAKGDRGSGGERGLKGVKGDLGDPGVPGQSG
RPGFKGDMGLTREDIIKMIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIKDFVAA
LVDRVTVGRNATRIGLVLYSLEVKLEFNLARHMTKQDVKQAIRKIPYIGEGTHTGTAIRK
ATQDAFYSSRKGVSKVAIVITDGQTDKREPVKLDIAVREAHAANIEMYALGIVNTSDPTQ
PEFLRELNLIASDPDSEHMYLIDDFNTLPALESKLVSKFCEDENGGLIYNRVTNGYGNNG
YRNGNNGNYGNGGNGYGTTNQEDFNRRRTVTTTGTQSQGGSVDLTQPINPGTATVQKGQR
EGGQDGGVYTPDWGTGRGDVPTLNRNTSSSSRDSSSSNTGGSSSSSSSGTSSSSSGSSGS
VQLVPASRPALPKEYVPLDPRCALVLDQGPCRDYKMRWYYDKQANACAQFWYGACEGNQN
RFDTEEECKRTCVQGRAG
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtccccttctctgtactggatcttgctgctctgtagactccacagtctctgggctcag
gatgactatagcacccatgatgatagaaccatggacaggagagccaagaaccaactactg
acaaccaacgtcatacccaagaatggccaatcacttttgaacgatgactgtggcctggag
ctggccttcctggtggacagctcggagagcgccaaggacaaccacgcccaggagaagagg
ttcgccacagatgtggttgaacgcctgcagggggtcaatctccagacgggccgggctctc
agctcgcgagccgccctcctgcagttcagcagccatgtgatcatcgagcagaccttcaag
cagtggcggggattggccaacttcaaggctcacatcgcacccatcggatacatcggccac
ggcacctacaccacctacgccatcaccaacctgaccaagatctacatggaggagtcagag
ccagggagcatcagggtggccatactgctgacggatggcatctcccaccccaggaaccca
gacatcttctccgccgtggtcgacgccaaaaaccagggcgtgaagttcttcatggtgggc
atcacgcccgcggccaatgacatctccaacgtggcacagctccgtcggctggctagctcc
ccagccaatcgctacctccataaccttcaggacaggggcatcgtggaaaaggtcatcaaa
gagattacagagttggctgatgaggggtgtcctctggccctgaagtgtgcgtgtgacaag
ggagagaggggacccattggcctccagggcaagaaggggaattctggggatgatgggaac
ccaggtgttaaaggatcgaagggtgagggcgggctcagtggacttcctggtcgaaatggg
gaagagggcaagccgggctacaaaggagagcagggggagagtggagaatgtggcacgcct
ggaatcaaaggagacagggggcctgaggggccagttggcaccaggggaaacagagggcta
caggggttacctggtccacatggcgatgccgggcctgagggtctcatagggaaaaaaggt
gagcggggacattctgggccacctggaatacaaggagaaactgggatcgggcttcctgga
cacaagggtgatgtggggttccaggggcgactggggcctccgggaccacctggcttaggg
gaacctggactaccggggcctcaagggccacagggcgtccaaggagagaagggtccaata
ggagaaggcttcgccgggccaaagggggaccggggcctggaggggccaaggggacccaga
ggacagcccggcgctggactgaaaggagacaagggtggctttggccctccaggttttcca
gggcctgtcggcctgccaggcctgggcattcagggggagaagggtatagaggggccacgg
gggccaccagggggcaggggcccacaaggagatggatatccagggcccaagggtgaccag
ggcttaccaggggagcttggttcaacaggagagagaggggctggcgaacctggggctaag
ggtgagccaggagcgtcaggattggctggttttcctggcctcccaggagaggatggggcc
ccgggacagaagggtgaaccaggtgttggtggtctgagggggccagagggagctgcggga
attggcacccagggtgagaagggagatcagggccagaggggcattcggggcttgggtggg
cctcctggaatcgccgggccctctggagcaaagggggagcctgggacaccaggtcgactg
ggtatgccaggacttccagggcggggaatcataggacctaagggaaatcttggcccacct
ggtccatctggaccaataggagagacgggctacgggctgcctggtcctaagggtgatcgt
ggaggtcctggtccgtctggtccatttgggcccaaaggcgatggttatcctggcactacg
ggaactcctggtctaccggggcttcctggtgaaccaggcctggaggggctgggcatccct
ggaccgaagggtgatattggcttcaggggctttccaggtttagcaggccccccaggcgag
gggctacaaggtctaccgggtggcattggacgactgggccccccagggccaacggggccc
cctgggcagggtattcaggggccaaagggtgaggcagggtctcagggcgtgacgggccct
cgggggccaccaggggaaggattcacaggggccaagggtgaccgcggctctggaggggag
aggggcctgaagggggtcaaaggtgatttgggtgaccctggagttcctggccaatcaggc
agaccagggttcaaaggcgacatgggcctcacaagagaagacatcattaaaatgatcaag
gagatttgtggttgcggaatcaaatgcaaggagcggcccatggagctggtgttcgtcatt
gacagctcggagagcgtggggccggagaactttgagatcatcaaggactttgtggcggcc
ctggtggaccgcgtgacggtgggccgcaacgccacccgcatcggcctggtcctctacagc
ctggaggtcaagctagagttcaacctggcgcgccacatgaccaagcaggacgtcaaacag
gccatacgaaaaatcccttatataggtgagggcacccacacgggcaccgccatccgcaag
gccacccaggatgccttctacagctcgcgcaagggggtcagtaaagtggctatagttatt
acggacggacagacggataagcgggagccggtgaagctggatattgcggttcgggaggca
catgcagccaacatcgagatgtacgcattggggatcgtgaacacgtcggaccccacgcag
cccgagttcctgagggagctcaacctgatcgcgtcggaccctgatagtgaacacatgtac
ctcattgatgacttcaacacgctgccagctctggagtccaagctcgtcagcaagttctgt
gaagacgagaacggtggtctgatatacaaccgtgtcaccaacggctacggcaacaatgga
tacaggaacgggaacaatgggaactatggcaacgggggcaatggctatggaaccaccaac
caggaggacttcaacaggaggcgaacagtcaccactaccggcactcaaagtcagggtggc
agcgtagacctgacccagcctatcaaccctggcactgccacagtacagaaagggcagcgt
gagggaggccaggatggaggtgtttacaccccagattgggggactggtcgcggggacgtt
cccacgttgaaccgcaacacatcctcctcctccagggattcctcatcttccaatacagga
gggtcctcttcctcatcatcatcaggaacgtcatcttcatcctcagggtcctcaggctct
gtccagttagtgcctgcatcacgacccgcacttcccaaagagtatgtgcctctggaccct
cgctgtgcactggtcctagaccagggcccctgtcgggactacaaaatgcgctggtactac
gacaagcaggccaacgcatgcgcccagttctggtacggagcctgtgaggggaaccagaac
cgcttcgacacagaggaggagtgtaagaggacatgcgtgcaaggcagagcaggctga
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integrated database retrieval system
