Oncorhynchus nerka (sockeye salmon): 115130122
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Entry
115130122 CDS
T07952
Symbol
boc
Name
(RefSeq) LOW QUALITY PROTEIN: brother of CDO
KO
K20020
brother of CDO
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
115130122 (boc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115130122 (boc)
Cell adhesion molecules [BR:
one04515
]
Immunoglobulin superfamily
Other
115130122 (boc)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
FN3_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
V-set
C2-set_2
Pur_ac_phosph_N
Ig_4
Ig_5
Ig_PDGFR_d4
Fn3_ROS1
Fn3_VIN3
G6B
Motif
Other DBs
NCBI-GeneID:
115130122
NCBI-ProteinID:
XP_029516774
LinkDB
All DBs
Position
LG6:complement(2849607..2896694)
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AA seq
1066 aa
AA seq
DB search
MSGTLDWTPWMRKRRARVLCALSAVLLCCLQGGATVNGATEEVPVFTEEPLSVVQKLGGS
VILRCSTQPPSANISWRLNGRELVAGAVGELGVVLEPGTLLIPALTNLTLGRYQCVASTN
AGALASVPANVTAAKLRDFEQDDQQDIEVDEGNTAVIVCHLPESQPKAQVRYSVKQEWLE
TSKGNYLIMPSGNLQIANATLDDEGPYKCAAYNPVTQEVKTSTSTDRLRIRRSTSEAAHI
IYPPVSRSIMVTKGQRLVLECVASGIPTPQVTWAKDGQDLRFHNNTRFLLSNLLIDSAGE
GDSGTYACHADNGIGSESAATVLYDVLVFEPPQVTVELQQQEVMWGENARFSCQARGKPT
PSVVWLHNARPLATSPRHRLSARVLRVINVGPQDDGLYQCMAENGVGSSQAAARLVTLPT
SNPSRSGKLTSSLCLLSPDKVLREQVPVKPGATGSVLTLDCSELTGQISVAEAPVILSQP
RTVKADFYDLTWKPRHDGGSAVVEYIVKYRKVKAAPPGDWTSSCILGPLHPADPGQLQPC
SQASVTVEMSAKNCAGLGQPAMMTFRTGKGRRGPGGQNEPPKTPAVPSPRLSPPEAPDKP
TISMATETSAYVTWIPRGNRGFPIQSFRVEFKKLKGKGGGEWEVAVTNIPPQRLSVEITG
LEKGMSYKFRVLAVNVIGASPPSVPSKAYTVLGGGRPNERPVDGPYITYNEAINETTIIL
KWTYTAVNNTPVYGFYIFYRPTDSDNDSDYKKDVVEGDRYWHSISDLQPETAYDIKMQSF
NEGGESEFGNVVILETKARLNQRPSPSETSSQRPEHSGGPVPRPSDLPYLIVGVVLGALV
FIIVAFIPFCLWRAWAKEKEMSDLCFPTVASPVSSCQYTMVPLQGLALVGHCPLDPHLPP
THAVYPPIGLYTSNGKHHRPTHCLSGLHQEDVQYDMECGTLLAQTMSNGHVPVYHYSNSE
PEHHGDGEDHCFLPEDSTLQLLNTSEQPISSQNLTGNARFYNGDIIKENAINQDPPCSPS
PLSLEEENSKATTSAATTPESQDALLLQEVNTLQRETPLVEQGTSD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaacattagactggactccgtggatgagaaagcgacgggcacgagtgctgtgt
gctctgagtgcagtgctgctgtgctgcctacagggcggcgccaccgtcaatggtgccact
gaggaagtacccgtgttcacagaggagcctctgtcggtggtccagaagctagggggaagt
gtgattctgaggtgcagcacccaacccccctcagccaacatcagctggcggctaaatgga
cgcgagctggttgccggggctgttggggaactgggggtggtactggagcctggcactctg
ctcatccccgccctcactaacctcaccctgggcaggtaccagtgtgtggccagcaccaac
gcaggggccctggccagtgtgcccgccaatgtcaccgctgccaagttgcgtgactttgaa
caagacgaccagcaggacattgaggtggatgaggggaacacagctgtgatcgtatgtcac
ctccctgagagccagcccaaggcacaggtccgctacagtgtcaaacaggagtggctcgag
acctccaaggggaactacctgatcatgccatcagggaacctgcagatagccaacgccact
ctggacgatgaggggccgtacaagtgtgctgcttacaaccctgtcacacaggaagtcaag
acctccacctccactgaccgcctgcgcatacgccgttcaacatcagaggcggcccatatc
atctaccccccagtgtctcgctccatcatggtcactaagggacagcgtctggttctggaa
tgtgtggccagcggcattcccaccccgcaggtcacatgggccaaggacggccaggacctg
cgtttccataacaacacgcgctttctgctcagcaacctgctgattgactcagcgggcgag
ggcgactcagggacatatgcgtgtcacgctgacaacggcatcggatcggagagcgccgct
acagtgctgtatgacgtgctggtgttcgagcctccccaggtgaccgtagagctccagcaa
caggaggtgatgtggggggagaacgcacgcttcagctgccaggccaggggtaaacccacc
ccctctgtcgtatggctccacaacgcccgccccctggccacgtcgccacgccaccgcctg
tctgcccgcgtgctgcgtgtcatcaacgtgggcccacaggacgatggcctgtaccagtgc
atggctgagaacggcgtgggcagctcgcaggccgctgccagactggtcaccttgccaacc
agtaacccgtcacggtcagggaagctgacgtccagcctgtgtctcctgagcccagacaag
gtgctgcgggagcaggtcccagtgaagcccggggccacggggagcgtgctgaccctggac
tgctctgagctgactgggcaaatctctgtggcagaggcccctgtcatcctcagccagccc
aggactgtcaaggccgacttctatgatctgacctggaaacctcgccacgatggcggctct
gctgtggtggagtacatcgtcaagtacagaaaggtaaaggctgccccgccaggtgattgg
accagcagctgtatactgggtcctctccacccagctgaccctggccagctgcagccatgc
agccaagcctctgtaactgtggagatgtctgctaagaactgtgctggcctgggacaaccg
gccatgatgaccttcaggacaggcaaaggtcgtagaggtccagggggacagaacgagcct
cctaaaactcctgcagtaccatcacctcgcctctctcctcccgaggcccctgataagccc
accatctccatggcgacagagacgtctgcgtacgtaacgtggatcccgcgcggtaaccgg
ggtttccccatccagtcattccgggtggagtttaagaagctgaaagggaagggagggggg
gaatgggaggtggctgtcactaatatccccccccaacgactgtctgtggagatcactggc
ctggagaaaggcatgtcctataagttccgtgtgttggcagtgaatgtgattggcgccagc
ccccccagtgtcccctctaaggcctacacggtgttgggtggcggcaggcccaacgaacgc
cctgtagacggaccctacatcacttataatgaagccatcaacgagaccaccatcatcctc
aaatggacatacactgccgtcaacaacacccccgtctacggtttctacattttctaccgg
ccgacagacagtgacaacgacagtgactataagaaggacgtggtggagggggaccgctac
tggcactccatcagtgacctgcagcctgagacggcctacgacatcaagatgcagagcttc
aacgaggggggagagagcgagtttggcaacgtggttatcttagaaactaaagctcgtctg
aaccagcggccctccccgtcggagacgtcgtcccagagaccagagcactccggggggcct
gtgccccgccccagcgacctcccctacctcatagtgggcgtggtcctgggggccctcgtg
ttcatcatcgtagccttcatccccttctgcctgtggagagcctgggccaaagagaaggaa
atgtcagacctgtgtttcccaactgtggcgtcccccgtctcctcctgccagtacaccatg
gtgcccctgcagggcctggcactggtcgggcattgccccctggacccccacttgccccca
acgcacgccgtctacccacccatcggactgtacacctccaacgggaaacaccatcgaccc
acacactgcctgtcaggactacatcaggaggatgtgcagtatgatatggagtgtggcaca
ctactagcacagaccatgtcaaacggacacgtcccagtctaccactactctaacagtgag
cctgagcatcatggggacggagaagatcactgctttctgcccgaagactccaccctccag
ctactcaacacctcagaacagccaatcagcagtcagaacctgacggggaacgcccgtttt
tacaatggggacatcataaaggagaatgccatcaatcaagacccaccctgctctccctct
cctctatcactggaggaggagaactccaaggcgacaacctcagcagctacaacgccagaa
tcccaagatgcacttctactccaggaagtgaacaccctccagagggaaacaccgctggta
gaacaagggacgtcagattaa
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