Oncorhynchus nerka (sockeye salmon): 115130338
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Entry
115130338 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: protein scribble homolog
KO
K16175
protein scribble
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115130338
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
LRR_8
PDZ_6
LRR_14
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_9
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
115130338
NCBI-ProteinID:
XP_029517239
LinkDB
All DBs
Position
LG6:complement(14628904..14728363)
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AA seq
1929 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPDEIFRYSRSLEELLLDANQLRDLPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSRL
PDGFTQLRGLAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELEVLPDTLGALPKLRELWLDRNQLSSLPPELGNLRRLVCLDMSENRLEELPSELS
GLLALTDLLLTQNLLEVVPDSIGSLKQLSILKVDQNRLTHLSDSIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNADRNRLGGVPDELGGCASLNVLSLRDNRVAKLPAQLADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDEESTGEKVLTCYLLPQQP
SSSLENLLQNSVDDSWTDSNLNRVSVIQFQEETTKQEAEDDEAAAERRGLQRRATPHHSE
LKVMKKGIEERRNEAYTSRADGETESPGAEEKRLSDLSNQSHDSAASNSTASANSHEERR
GLMTTDLVGGRGAXQEVEVLDEMEVEYVEPTVHFAEEPMYRGGDENGDDEEGEDGVPHSY
EEEQQRPQFPTEKQRLIRKDTPHYKKHFKITKLPKPEAVAALLQGFSPDAHLAQHPASHH
TAPEEEEEEEEEEEEEEGEECMVTPQRHNRIEEPELEDRSLLHANSSLQPVKGVSFDQVN
NLLIEPARIEEEEHNLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEDGPAARAG
VKVGDKLLEVNGVALQGAEHHTAVEALRSSGTAVSMSVIREHMVEPENAITTTPLRPEDD
YFPRERRASGLPFCMEASSPAGPRHRRSTCLVRNDKGLGFSIAGGKGSTAYRTGDLGIYI
SRIAEGGAAHRDSTLRVGDRVITINGVDMTEARHDQAVALLTGTSPTIALLVERDQAEPG
TAGGSPGLSRARAHSPPPPEPSDSPDQEEGNDDSPHGTHLSRPLQDEYPIEEVMLVKAGG
PLGLSIVGGSDHASHPFGVSEPGVFISKVIPHGLACQSGLRVGDRILEVNTIDLRHATHQ
EAVKALLSNKQEIRMLVRRDPSPPGMQEIVIQKQTGEKLGISIRGGAKGHAGNPFDATDE
GIFISKVSSSGAAARDGRLLVGMRILEVSNHSLLGMTHTEAVRVLRAVGDTLFMLVCDGF
DPGNAAAIEASPGIIANPFAAGIVRKNSMESISSIDRDLSPEEMDILQKEVEMARETSQW
EREEVNLGTGPLNLDYRTLAALPTTALQKVNRAPSTEHPRTDSPIRDAPYSPSTQPPSAH
SSTSSLCAGRETRFASIHFPPTALPAKNNSPLSPYETRPGSIQPLSRGGGRPSTSPGTPD
GHSRDGHSSPNPFQHGPSPINSQTSLQPRAPSPDTIDEFSLNPKQAYKAFAAVPHSLAML
EPPLQDLYSQRNNIHSNLPSPSLEPELNNEVFEDEVEGDGGLGGGLAAHVSPRPSLSSDR
RDYMSLAAVPRLSRASMDMVVKTPSPGGRDSPEQRSFRDRQKYFEIDMKQQTPDSKPKGR
VSLVGADDLKKMREEEERRFEQRAREYLMDDDEEEEDDLVTQMGVLKATGKVLLDGVEYK
VEPVATPPRHYNTPPSYSATPPSYCGSSGPSSVDGKGDSQRNSLEESFRLDQQRPNSMTG
LIPVYPGESGAPIRTAKAERRQQERLRMQSPELAPAGDKDLSPAEKRALEAEKRAMWRAA
RPYGLEEDVRQYEQDLAKRLYQSRVRASQGTVPPPQPQNAAASSAASQLRMKSLEQDALK
AQMVIAKSREGKKRGTLDQLAESPSPAPTPSPTPLEDFSPRGVTSPGRLSLSEKKFDYRQ
FAAIPSSKPVYDIQSPDTVDDFQFIDDGSSNPVPAEVPTATSTLEEMALYRNKRKLRQGR
RSLETAVPT
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgctgtaaccgccacgtcgagtcggtggacaagcga
cattgcaatttgcaaaatgtccctgacgagatattccgctacagccgcagtctggaagag
cttctcctcgacgccaaccaactcagagatttacccaagcctttctttagacttctgaac
ctgcggaagctgggcctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgacatctccagaaacgacattcctgagatccccgagagc
attaagttctgcaaggcgttggagattgcagacttcagtggaaaccccctctccaggttg
cctgatggtttcactcagctgcgagggctcgcccacctggccctcaacgacgtgtcactg
cagacactgcccaacgacataggaaacctggccaacctggtgacgctggagctcagggag
aacctgctcaagtcccttcccacgtcgctctcttttctggtgaaactggaacagctggac
ctgggcagcaatgaactggaagtgttgccagacacacttggtgctctccctaagctacgg
gagctgtggttggaccgtaaccagctctcctcattgccaccagagctggggaacctgcgg
aggctggtgtgtctagacatgtcagagaaccgcctggaggagttgccctcggagctgagc
ggcctgctggcactcactgacctgctgctcacacaaaacctcctggaggtggtccctgac
agcattggctctctgaagcagctgtccatcttgaaagtggaccagaaccgactgacccac
ctgagcgactccataggggagtgtgagaacctgacggaacttgtgctgaccgagaatctc
ttacagactctgcctcgctcgctgggcaagctgaagaagctgaccaatctgaatgcggac
cgcaaccggctgggcggcgtgcccgatgagctgggcggctgcgccagcctcaacgtgctc
tccctcagggacaaccgtgtggccaagctgcctgcccagctggccgacgccaccgagctc
cacgtgctagacgtggcagggaacaggttacagaacctcccgtttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggatgaggagagcaccggggagaaggtgctcacctgctacctgctaccccagcagcct
tcctctagcctggagaacctgctccagaacagtgtggacgacagctggacagacagcaac
ctgaaccgcgtgtctgtcatccagttccaggaggagaccaccaagcaggaggcggaggat
gacgaggcggccgcggagcgcaggggtctccagcggcgggcgacaccacaccacagtgag
ctgaaggtgatgaagaaagggattgaggagaggaggaacgaggcctacacttccagagcg
gatggagagacggagtcccctggtgctgaggagaagcggctgagcgatctgtccaatcag
agccacgactctgcggcgtccaacagcacggcctcggccaactcccacgaagagaggcgg
ggcctgatgaccacagatctggtgggtgggcgtggggccnnccaggaggtggaggtgcta
gatgagatggaggtggagtacgtagagcccacggtgcactttgcagaggagcccatgtac
cggggtggggacgagaatggtgacgatgaggagggcgaggatggggtcccacacagctac
gaagaggaacaacagaggccccagttccctacggagaagcagcgtctgatcaggaaggac
acgccgcactacaagaagcacttcaagatcaccaagctgccaaaacccgaggcagtggcc
gcgttactgcagggcttcagccccgacgctcacctggcccaacacccagcctcgcaccac
actgcccccgaggaggaggaggaggaagaagaggaggaggaagaggaggaaggggaggag
tgtatggtaactccacagcgccacaacaggatagaagagccagagctggaggataggagt
ctgcttcatgccaactcctccctgcagccggtcaagggggtgtcatttgatcaagtcaat
aatctgctgattgagcctgctcgaattgaggaggaagagcacaacctgaccattctacgg
caaactgggggtctgggcatcagcatagccggaggaaagggatccacaccctacaagggg
gatgatgagggcatcttcatctccagggtgtctgaggacggacctgcagcccgggctggg
gtcaaagtgggagacaaacttctcgaggtgaacggcgtggccctccagggtgctgagcac
cacacggcggtggaagccctgcgcagctcgggcaccgccgtctccatgagcgtcatccgg
gagcacatggtggagccggagaacgccatcaccaccacgccgctgaggcctgaggacgac
tacttcccccgggagagacgggccagcgggctgcccttctgcatggaggccagctccccc
gcaggcccccgacacaggcggtctacctgcctggtccgcaacgacaagggcctgggcttc
agcatcgccgggggcaagggttccacagcctaccgcacgggggacttggggatctacatc
tcccgaatcgcagagggaggggcggcccaccgagacagcacactccgcgtcggagacagg
gtcatcactatcaatggtgtagacatgacagaggccaggcatgaccaggcagtagcgctg
cttaccggcacctcccccaccatcgccctcctggtggagcgtgaccaggccgagccgggc
accgcagggggctccccgggcctgtcccgcgcccgcgcccactcccccccgcccccagag
ccctccgactcgcccgatcaggaggagggcaacgacgactcgccccacgggacccacctg
agccggccgctgcaggacgagtaccccatcgaggaagtgatgttggtgaaggcgggcggc
cctctgggactgagcatcgtgggtggcagcgaccatgccagtcatccgttcggcgtcagc
gagcccggtgtcttcatctcgaaggtgatcccacatggcttggcgtgtcagagtgggctg
cgggtcggggacaggatactggaggtgaacaccatcgacctgcgccacgccacccaccag
gaggctgttaaagccctgctctctaacaaacaggagatccgcatgctggtgcgcagggac
ccctcaccgccggggatgcaggagatagtgatccagaagcagactggagagaagctgggc
atcagcatacgcggcggtgccaaaggccacgctggcaaccctttcgacgccaccgatgag
ggcatcttcatatccaaggtgagctccagtggtgcagcggccagagatggccgtctgctg
gtgggcatgcggatcctggaggtgagcaaccacagcctgctgggcatgacccacacggag
gccgtgcgcgtgctccgcgccgtgggagacaccctgttcatgctggtgtgtgacggcttc
gacccaggcaacgctgccgccatagaggcgtcgccgggcatcattgccaacccgtttgcg
gcgggcatcgtgcgtaagaacagcatggagagcatctcctctatagaccgagacctgagt
cccgaggagatggacatcctacagaaggaggtggagatggcgcgcgagacgtcccagtgg
gagagagaagaggtgaacctgggcactggacctctgaatctggactaccggacgctggct
gcactgcccaccaccgctctgcagaaggtcaacagggcaccctccactgagcaccccagg
acagacagtcccattagagatgccccctactcacctagcacacaaccgcccagtgctcat
tcctccaccagttccctgtgtgcaggcagggagacccgcttcgcaagcattcatttcccc
cccactgcactgcctgccaagaataactctccattgagtccctatgagacgaggccgggt
tccatccagccactctctcgtggtggcgggcggccaagcacctcgccaggcactccggac
gggcacagcagagacgggcacagcagtcccaaccccttccagcatggcccctctcccatc
aactcccagacctctctgcagcctcgtgccccctcccctgacacaatcgatgagttctcc
ctgaaccccaagcaggcatacaaggcgtttgccgccgtgcctcactcgctggccatgctg
gagccgccgctgcaggacctgtatagccagaggaacaacatccactccaacctgccttct
ccttctctagagcctgagctgaacaatgaggtgtttgaggatgaggtagagggggacgga
ggactaggtggaggtctggcagcccacgtctctccccgaccctccctctcctctgaccgt
cgggactatatgagtctggcagcagtgccacgcctctccagagcctcaatggacatggtc
gtaaagactccatctcctgggggcagagacagcccagagcagcgctccttcagggacaga
cagaagtactttgagatcgacatgaagcagcagacgcccgacagcaagcccaaaggccgc
gtgtccctggtgggagcagatgacctgaagaagatgagggaggaggaagagaggagattc
gagcagcgggcgcgggagtacctgatggatgacgatgaggaggaggaggacgacctggtg
acgcagatgggagtgttgaaggccacgggcaaggtgttgctggacggggtggagtacaag
gtggagcctgtggccacaccccccaggcactacaacacgccccccagctacagcgccacg
ccccctagctactgtggcagctcagggccttcgtcagttgatggtaaaggagactcccag
aggaattccttagaggagagcttcaggttggatcagcagcggcccaactccatgactggt
ctgatcccagtgtaccctggagagtcgggggctcccatccggacggccaaggcagagcgg
aggcaacaggagcggctgaggatgcagagtccagagctggccccggccggagacaaggac
ctgtcccccgccgagaaacgggctctggaggccgagaagagagccatgtggagggcagca
aggccctatggcctagaggaggatgttaggcagtatgagcaggacctggctaagaggctc
taccagtcgcgagtgagggcgtctcagggcaccgtgccgccccctcagccccaaaacgct
gccgcttcctccgctgcctcccagctcaggatgaagtctctggagcaggatgctctgaag
gctcagatggtcatcgctaagtctcgggagggaaagaagcgtggcacactagaccagctg
gccgagtcaccctcgcccgcccccacgccatcccctacccctctggaagatttcagtccc
agaggagtgacgtcaccaggcagactgtccctgtcggaaaagaagtttgactaccgacag
tttgctgccattccttcttccaaacccgtatacgacatccagtcccctgacacggtcgac
gactttcagttcattgacgacggctccagtaaccctgtgcccgctgaggtccccactgcc
acctcaacgctggaggagatggccctctacagaaacaagcgcaagctgaggcagggccgc
cgcagcctggagaccgccgtgcccacataa
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