Oncorhynchus nerka (sockeye salmon): 115130348
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Entry
115130348 CDS
T07952
Name
(RefSeq) transcriptional repressor NF-X1-like isoform X1
KO
K12236
transcriptional repressor NF-X1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115130348
04121 Ubiquitin system [BR:
one04121
]
115130348
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
115130348
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
115130348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
zf-NF-X1
Motif
Other DBs
NCBI-GeneID:
115130348
NCBI-ProteinID:
XP_029517263
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All DBs
Position
LG6:complement(15154922..15184904)
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AA seq
1125 aa
AA seq
DB search
MAEGSVTDSLDLNPDETSARQKCNQQQSRRGRNREGHNRNWSGSNNYGPAPQQPQQGHFH
HGVKQSHVHDNSTVPVHFHPPPYHQEDVSRGRGRGGGRGANGGGGGRGSRGQPPRWNRPG
VDTGPPGLPRGHHGLGGGGGGYRPGTPPIDGPSWRRGDPGGWSVEVGPAHEDHQDTRPEK
PRRFSKEPRREERGARSAKGPPHSLEKQENHDSHATGGGGWDPAEPREETPPSEMGARIR
KGRRPEEWNPHVDAQQKFPEPKRRQGPIKEYPQEKDHERGARDIPSGHRDKLGSGTEEEP
SWRSQGRGQARRTPLQDRGQRRTLNSDHRPGQKRWDNVPNKSKETQTGCLIEQLSEEKYE
CMVCCEVIRVMAPVWSCHSCFHVFHLNCIKKWARSPASQADETNDGWRCPACQNVVFQPP
NVYKCFCGKATNPEFQRSEIPHSCGDMCGKKRSGADCKHPCNILCHPGPCPQCPASVTKA
CTCGRTSQPMRCGQATAIHCDKQCGATLNCSEHTCTQVCHSGLCQPCPLQVKQVCYCGVV
SREVLCGTDKDRFDGSGHFCCQKACGKMLDCEAHRCEQVCHPGPCKPCPRSPRLVRSCPC
GQTALAKLLELGYPERRGCSDPIPSCGKTCSKPLPCGSSETIHICEKLCHEGSCGPCSLT
STIKCKCGSKTKDVPCAVIQNEDGLIFTCEKRCLKKRSCGRHKCGELCCVGAEHKCSLIC
GYKLNCGLHRCQELCHRGNCQPCWQTSFDELACHCGVSVLFPPIACGTKPPECKNPCTRR
HECDHPVFHNCHSEEKCPPCTYLTQKWCMGKHERRSNIPCHLQDISCGLACNKVLLCDLH
RCRRICHRAECLAEGVCRQPCLLPRSNCGHPCNAPCHKGTSCPGSTCTAKVALQCDCGRR
KEMVVCTEAASAHQRYAAIAMASKLSDMQLGDSVDMGLITKKEMKHTKLECDEGCAALER
NRRLAEALQIDPSVDPFNMRSSSSTYSDSLRVDARKDFKFVSEIEEEIKNLVELTSKGKQ
SKRSHCFPPMNREHRKLVHELAEAYNVESVSYDSEPKRNVVITAIRGKSACPNSTLTSLM
ERDTGVPRAPPPIAHIKHSSKADSVSSWSKAVKEEPVIDYFDVQD
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggctgagggctcagtcacagactctctggatttgaatccagatgagacttcagcacga
cagaaatgtaaccagcagcaatccaggaggggtcggaacagagagggccacaaccgtaac
tggagtggttctaataattacggcccagcaccgcagcaaccgcagcaaggccattttcac
catggggtcaaacaatctcatgtccatgacaattcaacggtccccgtacatttccatcct
cctccctaccaccaagaggatgtatcaaggggtcgaggaagaggagggggaagaggggct
aacggtgggggagggggccggggctcaaggggccagcctccaaggtggaacaggcctggg
gttgacactggtccccctggcttacctaggggtcaccatggactgggtggtggtggtggt
ggttacaggcctggaacaccccccatagacgggcctagctggcgtcgaggagaccctggc
ggctggagtgtagaggtggggcctgcccacgaagaccaccaggacacccgccctgaaaaa
cccagacggttcagcaaggagccgcgaagagaagagagaggtgcgaggagtgcgaaagga
cctcctcactctctggaaaagcaggagaaccacgacagccacgctacaggaggaggaggc
tgggaccctgctgagcccagagaagaaaccccaccatcagaaatgggggccagaatccgg
aaaggacggagacccgaagaatggaacccccacgtcgacgctcaacagaaattccctgag
cccaagcgacgccaggggcctatcaaagaatatccccaggagaaggaccatgagagggga
gccagagacatcccctctggccatcgtgataaactgggctctggcactgaagaggagccc
agctggaggagtcaggggagaggccaggcgagacgcacccccctacaggacagaggccag
aggagaacactcaactcagaccacaggcctggacagaagaggtgggacaacgtgcccaac
aagagcaaggagactcagacaggttgcctgatcgagcagctgtctgaggagaagtatgag
tgcatggtgtgctgtgaggtgatcagagtcatggctccagtctggagctgccacagctgc
ttccacgtcttccatctcaactgcatcaagaagtgggcccgctctccagcctcccaggca
gacgaaacaaatgatgggtggcggtgtccggcctgtcagaatgttgtcttccaacccccg
aacgtctacaagtgcttctgtggcaaagcgaccaacccagagttccagcgtagtgagatc
ccacacagctgtggggacatgtgtgggaagaagaggagcggagcagactgcaagcacccc
tgtaacattttgtgtcacccaggaccttgtccccagtgtcctgcttctgtcaccaaagca
tgcacctgcggaagaaccagtcagccaatgcggtgtggccaggccactgccatccactgt
gacaagcagtgtggcgccaccctcaactgttccgaacacacctgtacccaggtgtgccac
agcggactgtgccagccttgcccgctacaggtcaagcaggtgtgctactgcggtgttgtg
tctcgggaggtactctgtgggacggataaagaccgctttgatggctccggtcacttctgc
tgtcagaaagcatgtggcaagatgttggactgtgaggcccaccgctgtgagcaggtgtgc
caccctgggccgtgcaagccgtgcccacgctcccccaggcttgtaaggagctgcccctgt
ggacagacggctctggccaagctcctggagctgggctaccccgaacgccgcggctgctcc
gaccccatcccctcctgtggcaagacctgcagcaagcctctgccctgcggctccagcgag
acgatccacatctgtgagaagctgtgccatgagggaagctgtggtccctgctcgctcacc
tccaccatcaaatgcaaatgcggctctaagaccaaggatgttccctgtgcagtcatccag
aatgaagatggactgatatttacttgtgagaagcgctgcctcaaaaaacgctcctgtggc
cgacacaaatgtggcgagctgtgctgtgtgggcgcggaacacaagtgctctctgatctgt
ggctacaagctcaactgtggcctccaccgctgccaagagctctgtcaccgtgggaactgc
caaccctgctggcaaaccagttttgatgagctggcgtgccactgtggggtgagtgtcctg
ttcccccccatcgcctgtggcacgaagcccccagagtgtaagaacccgtgtaccaggagg
cacgagtgtgaccacccagtgttccacaactgccacagtgaggagaagtgcccaccctgt
acctacctcactcagaagtggtgcatgggaaagcatgagcgaaggagcaacatcccgtgc
caccttcaggacatctcctgtggcctggcctgcaacaaggttctgctgtgtgacctccac
cgctgccgccgcatctgtcaccgggccgagtgtcttgccgagggcgtctgccgccagccc
tgcctgctgccccggtccaactgtggccacccctgcaacgccccttgccacaagggcacc
agctgcccgggcagcacctgcactgctaaggtggcgctacagtgcgactgcggtcggaga
aaggaaatggtggtgtgcacggaagcagccagcgcccatcagaggtatgcagccattgcc
atggccagtaagctgtctgacatgcagctgggtgactctgtagacatgggtcttatcact
aagaaggagatgaaacacaccaagttggagtgtgacgaggggtgtgctgcactggaaagg
aacaggcgattggctgaggccctgcagattgacccgtcagtggaccccttcaatatgcgc
tcctcctcctcaacgtacagtgacagcctccgagttgatgccagaaaagattttaagttt
gtcagcgagatagaagaggagatcaagaatctggttgagctgaccagcaagggtaaacag
tccaaaaggagccactgcttccccccaatgaaccgggagcacaggaagctagtccacgag
ctggccgaggcctacaacgtggagagtgtgagctacgacagcgagcccaaacgcaacgta
gtcatcaccgccatcagggggaagtctgcctgtcctaactcaaccctgacctccctgatg
gagagagacactggggtcccgagggctcctccacccattgcccatatcaaacatagcagc
aaggctgacagtgtgagcagctggtccaaggcagtcaaagaagagccagtgattgactac
ttcgatgtccaggattaa
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