Oncorhynchus nerka (sockeye salmon): 115130413
Help
Entry
115130413 CDS
T07952
Name
(RefSeq) ubiquitin-protein ligase E3C-like isoform X1
KO
K10589
ubiquitin-protein ligase E3 C [EC:
2.3.2.26
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115130413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115130413
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
115130413
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
HECT type E3
115130413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
IQ
Motif
Other DBs
NCBI-GeneID:
115130413
NCBI-ProteinID:
XP_029517405
LinkDB
All DBs
Position
LG6:18678181..18725966
Genome browser
AA seq
1089 aa
AA seq
DB search
MSFSFEGDFKTRPKVSLGGASKKEEKASLLHRTQEERRKREDERRRLKNAIVIQSYIRGY
HDRKQQYAIQRGNFDRCVCQAQSEGGPPMSDAASLSLLTRQLLFFYRQSEDSWRLIWICQ
NLVKHNGQFLKLLAGPERQTCVFQIKRVLGSCCRLLQTCKDDSLNVAVPMRMLEIFSSER
TYLPVLEDMNCVASLIEQILHYMVQKGYYRSLYILVNHKLPSSLEYSDAPYGAHAIPLAS
TLLEHTLKPLHFTYSSCTTGARQFVFAAFTEEFTSAPFTEQIFHFFIPALSDPRLHFPFE
AFLGSLQATVVSSAAALKRAPWLFYFVLSVGETCLGSLSEEGLQLYLRALQALLPLLPVS
ESTSRPEVISDSEDEEDTNTQAPSTQDDSYRISVQLITEECVHKLDTKQQTNALLNLVWR
DSASEEVFTMMASICHTLMVQHRMMVPKVRLLYSLAFNARFLRHLWHLIQSMTTKMITGS
MVPLLQVISRGSPMSLEDSNRIIPLFYLFSSLFSHSLISVHDSEFFGYPMEGHGHSNTTM
MPFTLSELVKLSQLLRDACLGIIKLAYPETKTEHREEYMAAFRSVGVKTNAEVQQRIQAE
QKRWVQLFKVITNLVKMVKARDIRRPFCPAGHWLSEEVNIRADKVTQLYVPSARHVWRTR
RMGRIGPLQSRLDVGMEPPQLSVSEERHLAILTELPFVVPFEERVKIFQRLIYADKRDVQ
GDGPFLDGIIVTIRRNYIYEDAYDKLSPENEPDLKKRVRVHLLNAHGLDEAGIDGGGIFR
EFLNELLKSGFNPNQGFFKTTNEGLLYPSPTAQMLVGDSFARHYYFLGRILGKALYENML
VELPFASFFLSKLLGTSADVDIHHLASLDPEMYRNLLFLKSYEDDVEDLGLNFTIVNNDL
GEAQVVELKPGGKDIPVSTANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVNLEWLRM
FDQQEIQVLISGAHVPICLDDLKTFTNYSGGYTATHPVITIFWEVVESFTDEEKRKLLKF
VTSCSRPPLLGFKELYPAFCIHNGGNDLERLPTASTCMNLLKLPEFCDQHLMRNKLLYAI
ESSAGFELS
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcagctttgagggagatttcaaaacaagacccaaggtgtctcttggaggagcg
agtaaaaaggaggaaaaagcatctcttctacaccggacacaagaggaaaggcgaaaaaga
gaggatgaaagacgaagattgaagaacgctattgtcattcagtcctatatacgaggatac
catgaccgaaaacagcaatatgccatccagaggggcaactttgaccgctgcgtctgccag
gcacagtcagaaggtggaccgccaatgtccgacgctgccagtctcagtctcctaacgagg
caactcctttttttctacagacagagtgaggattcatggagattgatatggatttgtcag
aacctagtgaaacacaatgggcagtttttgaagctgctggcagggcccgagagacagacg
tgtgtgtttcagatcaagagggtcctgggctcctgctgcagacttctgcagacctgcaag
gatgacagtttgaatgttgccgtccccatgaggatgctggagatcttttcttcagagaga
acttatcttcctgtccttgaagacatgaattgtgtagcgtcgttaatcgagcagattttg
cactatatggtacagaaaggatactacaggtcactttatattctagtgaatcacaagctt
ccttccagtctggagtacagcgatgctccctatggggcacacgctatccccttggcaagc
acactgctggagcacacgctgaagcccctgcactttacctactcctcctgcactacaggc
gcaaggcagtttgtgtttgcggccttcactgaggagttcacctcggcgcctttcacggag
cagatctttcatttctttattccggcgctgtccgatccgcgcctccacttccccttcgag
gccttcctgggctccctgcaggccaccgtagtctcctccgcagcggcgctgaaacgtgcg
ccgtggctcttctactttgtcctctcggtcggggagacctgcctgggttcattgtcagag
gagggcctccagctgtacctgcgagctctgcaggccctcctgcctctcctccccgtgtca
gagagcaccagcaggccggaggtcatcagtgactctgaggacgaggaggacaccaacacc
caggctccttccacacaggacgacagttatcggatatcggtgcagctgatcacggaggag
tgcgtccacaagctggacacaaagcagcagacgaacgcgctgctcaacctggtgtggagg
gactcggccagcgaggaggtcttcaccatgatggcctccatctgccacacactcatggtg
cagcaccgcatgatggtgcccaaagtcaggcttctgtacagtttagcgtttaatgcacgt
ttcctgagacatctctggcacctgatacagtccatgaccaccaaaatgatcacggggtcc
atggttccgctgttgcaggtcatttcgcgggggtctcccatgtccctggaagactccaat
cgcatcattcccctcttctatctcttcagttccctcttcagccactcgctcatctccgtg
cacgacagcgagttctttggctaccctatggagggccatggccacagcaataccaccatg
atgccgttcacattgtccgagctggtgaagctgtctcagttgctgagggacgcgtgtctg
ggcatcatcaagctggcctaccccgagaccaagacggagcaccgcgaggagtacatggcc
gccttccgcagtgtgggggtcaaaaccaacgcagaggtgcagcagcgcatccaggccgag
cagaaacgctgggttcagctcttcaaggtgatcactaacttggtgaagatggtgaaggct
cgtgacatcagacgtcccttctgtccggcaggtcattggctctctgaagaggtcaacatc
agagcagataaggtgacccagctgtacgtcccctcggccagacacgtgtggaggacgcgg
aggatgggacgcatcgggcccctgcagtccagactggatgtggggatggagcctccacag
ctgtctgtgtctgaggagagacacttggccattctgaccgagctgcccttcgtcgtgccc
tttgaggaacgagtcaagatcttccagagattgatctacgcggacaagcgggacgtacag
ggagacgggccgtttctggacgggatcatcgtcaccatcagacggaactacatctacgag
gacgcctacgacaagctctccccagaaaacgagccggacctgaagaaacgtgtccgggtg
cacctactcaacgcccacggtctggacgaggcgggcatcgacggcgggggcatcttccgc
gagttcctcaacgagctgctcaagtcgggcttcaaccccaaccagggctttttcaagacc
accaacgagggcctgctttatcctagccccaccgcccagatgctagtgggggactccttc
gccagacactactacttcctgggacggatactggggaaggccctgtatgagaacatgctg
gtggagctgccgtttgccagctttttcctgtccaagctgctgggcaccagtgctgacgtg
gacatccaccacctggcctcgctggaccccgagatgtaccgaaacctgctcttcctcaag
agctacgaggacgacgtggaggacctgggactcaacttcaccatcgtcaacaatgacctg
ggagaggcacaggtggttgagctgaagcctggagggaaggacatccctgtgtccacggcc
aacaggatcgcgtatatccatttagtggcagattaccgactcaacaaacagatcaggccc
cactgcctggccttcagacagggcctggccaacgtggtcaacctggagtggctgcgtatg
tttgaccagcaggagatccaggtgttgatatctggagctcatgtacccatttgtcttgac
gacctgaagacgttcacaaactactcaggtggttacactgccactcaccctgtcattacc
atcttctgggaggtggtggaaagcttcaccgatgaagagaaacgcaagctgctcaagttt
gtcaccagttgctcgcggcctcccctcctgggcttcaaggagctgtacccagccttctgc
atccataacggggggaacgacctggagcgcctgcccacggcctccacctgcatgaacctg
ctcaagctgcccgagttctgcgaccagcacctgatgaggaacaagttgctgtacgccatc
gagtcctccgcaggcttcgagctcagttga
DBGET
integrated database retrieval system
