KEGG   Oncorhynchus nerka (sockeye salmon): 115130528
Entry
115130528         CDS       T07952                                 
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115130528
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:one03041]
    115130528
Spliceosome [BR:one03041]
 Complex B
  Other components
   Prp19-related factors
    115130528
 Complex C
    115130528
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 zf_CCCH_4 Torus RRM_occluded zf-CCCH_2 Nup35_RRM_2 zf-CCCH zf-CCCH_4 zf-CCCH_10 RRM_YTH1 zf-CCCH_12 RRM_3 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 115130528
NCBI-ProteinID: XP_029517626
LinkDB
Position
LG6:complement(32813020..32833114)
AA seq 421 aa
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMSKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLDIKDDVPKSDVNKEYYTQN
AEREIGNSDGTRPVGLLGKAPSSSEMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKTITTLYVGGMG
DTISDAELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLTV
KWGRSQAARGKEAYQDGVSEMGTRLDPVPGLPGALPPPPALEEGTPTNYFNLDPGTSPNV
MNISLPPPPGINPPPPGFGAPMFHMGSMGPPPPMGMRPPGHIHYPSQDPQRMGAHAARHG
D
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggcgacgtccctaggagctaacacatacaacagacagaattgggaagacgcggatttc
ccaattctgtgtcagacatgtttgggggaaaatccatacatccgcatgagcaaagagaag
tatgggaaagaatgcaagatctgtgctcgtcccttcactgtgttccgctggtgtccagga
acaaggatgcgcttcaagaagacagaggtgtgtcagacctgcagcaagatgaagaacgtc
tgtcagacctgtcttcttgacctggagtacggtttgccaatccaggtcagggacactggg
ctggacatcaaggatgacgtgccgaagtcagacgtgaacaaggagtactacacacagaat
gctgagagagagatagggaactctgatgggacacggccagtgggtctgctgggtaaggcc
cccagctccagtgagatgctgctgaagctggcccgcacaacaccctactacaagaggaac
agaccccacatctgctccttctgggtgaagggagagtgcaagagaggagaggagtgtcct
tataggcacgagaagcccacagacccagatgatcccctggcagaccagaacattaaggac
cgttactatggtattaatgacccagtggctgacaagctgctgaaacgagcctccaccatg
cccagactggacacgcctgaggacaagaccatcaccacactctatgtaggggggatggga
gataccatctcagatgcagagctgaggaatcacttctatcagtttggggagatccggacc
accaccattgtccagaggcagcagtgtgccttcatccagtttgccacacggcaggcagct
gagcttgctgcagagaagtccttcaacaagctcatcatcaacggacgcaggctcaccgtc
aagtggggcaggtctcaggcagccagaggaaaggaggcctaccaggatggggtcagtgag
atgggaaccagattagaccctgtgccaggactgcctggagctctccccccaccccctgct
ctggaagaaggcactcccactaactacttcaatctggaccctggtacatctcctaatgtc
atgaacatctctttgcccccaccgcccggcatcaacccaccacctccaggttttggtgcg
cctatgttccacatgggttcgatgggtccccctcctcccatgggcatgagacccccagga
cacatccactacccgtcccaggacccccagcgcatgggtgcccacgctgcccgccatggc
gactag

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