Oncorhynchus nerka (sockeye salmon): 115130599
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Entry
115130599 CDS
T07952
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115130599
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115130599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115130599
04121 Ubiquitin system [BR:
one04121
]
115130599
03400 DNA repair and recombination proteins [BR:
one03400
]
115130599
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115130599
Spliceosome [BR:
one03041
]
Complex B
Other components
Prp19 complex
115130599
Complex C
Prp19-CDC5 complex
115130599
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
U-box type E3
115130599
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
115130599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SPT8
U-box
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Nup120_160
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
eIF2A
B-prop_COPA_B_2nd
RMC1_N
Cytochrom_D1
Beta-prop_LRRK2
Nucleoporin_N
Mala_s_1-like
zf-Nse
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
115130599
NCBI-ProteinID:
XP_029517754
LinkDB
All DBs
Position
LG6:complement(35027747..35032560)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGVDPMNSQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQSMPASQPAAGGAGGEPMEVSVQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCI
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGQVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GLAFGDNAQFLSSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgcgcaatttccaatgaggtccccgagcacccttgcgtgtccccggtg
tctaaccaggtgttcgagcgccgactgatcgagaagtatattgcagagaatggagtggat
cccatgaatagccaaccactgtcggaagagcaacttatcgatataaaagtgtctcatcct
atccgaccaaaggctccctcttctaccagtatccctgccatactcaaggctctgcaagat
gagtgggatgcggtcatgttgcacagtttcactctgaggcagcagctgcagacgactcgc
caggagctttctcacgccctctaccagcatgacgcagcctgcagagtcattgctcgtctt
accaaggaggtcactgcagctagagaggccctggccacactcaagccccaagccggattg
gtggcccctcagtctatgcccgcctctcagccagccgctgggggtgctggtggggaacca
atggaggttagtgtgcaggtgggaatgactccagagatcatccagaagcttcaagataag
gctactgtccttaccacagagagaaagaagagaggaaagaccgtgccagaggagctggtc
agggctgaggatctgagcaagtaccgccaagtggcttcccacgctggacttcacagtgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact
ggtggggctgataagaatgtggtggtatttgataagaaggaggagcagatcattgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtctgtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgtgactgggggcaactgtatc
caggtggtgcgagctcacgaggcgagtgtgaccgggctgtcacttcacgcaactggggac
taccttctcagctcttccgaagaccagtactgggccttctcggatatccaaactggccaa
gtccttaccaaagtcacagatgaggctgctggtgttgctctgacttgtgctcagttccac
cccgacggtctgatcttcgggacgggaaccgccgactcccagatcaagatttgggatctg
aaggagcgcacaaacgtggccaacttccctggccactctggccctgtcacctccatcgcc
ttctctgagaacggatactacctggctacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactatgaggttaag
tctctggtgtttgatcagagtggtacatacttggctgtgggtggatccgacatcagggtg
tacatctgcaagcagtggtcggaggtcctcaacttcagcgaccattctggcctggtgaca
gggctggcattcggagacaatgctcaattcctttcctccgctggaatggacagaagcctc
aagttctacagcctgtag
DBGET
integrated database retrieval system
