Oncorhynchus nerka (sockeye salmon): 115130638
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Entry
115130638 CDS
T07952
Name
(RefSeq) transcription factor Sox-3
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115130638
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115130638
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115130638
NCBI-ProteinID:
XP_029517835
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Position
LG6:complement(36611249..36613067)
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AA seq
300 aa
AA seq
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MYNMMETEIKSPLPQSNSGSAAGNKNNSANDQDRVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYS
LPGGLLAPGANAVNNGVSVGQRMDSYAHMNGWTNSAYSLMQDQLAYPPHHSMNSPQIQQM
HRYEMAGLQYPMMSSAQTYMNAASTYSMSPAYTQQTSNAMGLGSMASVCKTEPSSPPPAI
TSHSQRACLGDLRDMISMYLPPGGDGADHSSLQTSRLHSVHPHYQTAGTGVNGTLPLTHI
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaaccgagatcaagagcccgctcccgcagtccaattcgggctcc
gctgcgggcaacaagaacaacagtgccaacgaccaggaccgggtgaagaggcctatgaac
gctttcatggtgtggtcccgtggacagcggagaaagatggcacaagagaaccctaaaatg
cacaactctgagatcagcaagcggctcggtgcagactggaaacttttgactgacgcagag
aagagacccttcatcgacgaggccaagcgtctgcgcgccatgcacatgaaggagcatccg
gattacaaataccgtccccgcaggaagaccaaaaccctgctcaagaaagacaagtattct
ttgccaggaggacttctagcgccaggtgccaacgctgttaacaacggcgtctcggtggga
cagcggatggacagttatgcacacatgaatggctggacaaacagtgcgtactccctcatg
caggaccagttggcctaccctccgcatcacagcatgaacagccctcagatccagcagatg
caccggtatgagatggcagggctccagtaccccatgatgtcctcggcgcagacctacatg
aacgcagcgtccacgtacagcatgtccccagcatacacgcagcagacctccaacgccatg
ggcttgggctccatggcatccgtgtgcaagaccgagccgagctcacctccaccggcgatt
acctcccactcccagagagcgtgtttgggggatctgagggatatgatcagcatgtacctg
cctccgggtggagacggcgcggatcactcttcccttcagaccagtcggttacacagtgta
catccgcactatcagaccgcggggactggcgtgaacggaacgctacccctaacccacatt
tga
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