Oncorhynchus nerka (sockeye salmon): 115130710
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Entry
115130710 CDS
T07952
Name
(RefSeq) FACT complex subunit SSRP1-like isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115130710
03036 Chromosome and associated proteins [BR:
one03036
]
115130710
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
115130710
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
115130710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
POB3_N
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
Motif
Other DBs
NCBI-GeneID:
115130710
NCBI-ProteinID:
XP_029517964
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All DBs
Position
LG6:complement(39188530..39213401)
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AA seq
712 aa
AA seq
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MGDTLEFNEIYHESKGSWNDGRLRFSKQNVVYKSSKTGKVDNIPAAELSVATWRRVCLGY
GIKLATSNGHVYKYDGFRDTDYERISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDSSVFEIPLASVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGPADEGADPVE
AFAQNVRSKADVIQATGDAVCVFKELQCLTPRGRYDILIYPAFLHLHGKTFDYKIPYTTV
LRLFLLPSKDQRQMFFVISLDPPIKQGQTRYHFLILHFSKEEELKLTLNMSEEEVEKRYE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGNTPGAQCITCSYKAQSGLLYPLERG
FIYVHKPPVHLRFEEISSVNFARGTTTTRSFDFEVETKQGNQFTFSSIEREEYGKLFDFV
NAKKLHIKNRGFKEKKAKNNEYSDSDDDQHDAYLERMKAEGKIREEGDGSNDSDEETDES
FNPGEESDVAEEYDSNASESDSGSGGDGSGDEGKKKLAKKAKVVKEKRERKPRKEKKQKD
TNAPKRPMSSYMLWLNSSRERIKSENPGISITEISKKAGEMWKQIGKEDKEEWDGKAEEA
KKTYEKAMKEYRESGGGSSTPAKKESKKKAGGKKEDKKRKSGGGEKEKEQGGNDSFKSRE
FISSEESSSEGERKKAKKAKKAKGKPQSRDKESEEEEEKAMTTPPSSENDSD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgagatctaccatgaatccaaggggtcctggaacgac
ggtcgtctgcggttcagtaagcagaatgtggtgtataagagcagtaagaccgggaaggtg
gacaacatcccggcagcagagctgtctgtggccacatggaggcgtgtgtgtctgggatac
ggcatcaaactggcaaccagcaacggccatgtctacaaatacgacggcttcagagacacg
gattatgagaggatctctgagttcttcaaggccaactacaaggtggagctgacagagaag
gacatgtgcgtgaaaggctggaactggggcactgctaaattctctggtccattgttgtcg
tttgacgtgaatgacagctccgtgtttgagatccccctggccagcgtgtcccagtgtgcc
accgggaagaacgaggtgacgctggagttccaccagaacgatgacgctgaggtctctctc
atggaggtccgtttctacgtcccccccggccccgcagacgagggggcagaccccgtggag
gcgtttgcccagaatgtgcggtctaaggcagatgtgatccaggctacaggagatgctgtg
tgtgtcttcaaagagctgcagtgcctcacccccaggggcaggtatgatatcctcatctac
cccgccttcctgcacctccatggtaagacgtttgactacaagatcccctacaccaccgtg
ctgcgtctcttcctgctaccaagcaaggaccagagacagatgttcttcgttatcagtctg
gacccgcccattaagcagggacagacgcgttaccacttcctcatcctgcacttctctaag
gaggaggagctcaagcttaccctcaacatgagcgaggaggaggtggagaagcgttatgaa
gggaagctcagcaagaacatgtcaggttctctctatgagatggtcagcagggtgatgaag
gctctggtcaacaggaagatcactgtgcccggaaacttccagggtaacacccctggggcc
cagtgtataacatgttcctacaaggctcagtccggcctgctctacccgctggagcggggc
ttcatctacgtccacaagcccccagttcacctgcgcttcgaggagatctccagtgtcaac
ttcgccagaggcaccaccaccacgcgctccttcgacttcgaggtggagaccaagcagggg
aaccagttcaccttcagcagcatcgagagggaagagtacgggaagctgtttgactttgtc
aacgccaagaaactccacatcaagaaccgaggattcaaggagaagaaggctaagaacaac
gagtacagtgactcagacgacgaccagcacgatgcctacctggagaggatgaaagccgag
ggcaagatcagagaggagggagatggcagcaacgactcagacgaagagaccgatgagtct
ttcaaccctggagaggagagtgatgtcgctgaggagtatgacagtaacgcgtcggagagc
gacagcggcagcggaggggatggcagcggtgatgagggaaagaagaaacttgcaaagaag
gccaaagtcgtgaaagagaagagggagaggaaaccacgcaaagagaagaagcagaaggac
acgaacgcccccaagaggccgatgagttcctacatgctgtggctcaactccagccgcgag
cgcatcaagtctgaaaaccccggaatctccatcacagagatctccaagaaggcaggagag
atgtggaaacagatcgggaaggaggacaaagaggaatgggacgggaaggcagaggaggct
aaaaagacctatgagaaagccatgaaggaatacagagagagtggtggaggctcctccaca
ccagccaagaaggagagcaagaagaaggcgggaggcaagaaggaggacaagaagaggaag
tctggtggaggagagaaagaaaaggagcaaggaggaaacgacagctttaagagccgagag
tttatctccagcgaggagagttcatctgaaggtgaacgcaagaaggccaagaaagccaag
aaggccaaaggcaaaccccagagcagggacaaggagtctgaggaggaagaagagaaagca
atgaccacaccccccagctctgaaaatgactctgactga
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