Oncorhynchus nerka (sockeye salmon): 115130736
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Entry
115130736 CDS
T07952
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03020
RNA polymerase
one03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115130736
09124 Replication and repair
03420 Nucleotide excision repair
115130736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115130736
03400 DNA repair and recombination proteins [BR:
one03400
]
115130736
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115130736
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115130736
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115130736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
115130736
NCBI-ProteinID:
XP_029518015
LinkDB
All DBs
Position
LG6:complement(39928501..39938363)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctactttgatgagaagggtctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtacagaggattgtggag
gacgccccgcccattgacctgcaggctgaggcccagcacacctctggggaggtggaggac
ccgccacgctacctgctgaagtttgaacagatctacctttccaaacccactcactgggaa
agagatggagcaccttcacctatgatgcccaacgaagccagactccggaacctcacgtac
tctgctcccctgtacgtggacatcaccaagaccatcatcaaggagggagaggaccagctg
cagacccagcaccaaaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgccttctcagcggcctgacggaccgtgatctctgtgagctcaacgagtgcccgctagat
cccgggggctacttcatcatcaacggctctgagaaggtcctgattgcccaagaaaagatg
gccacgaacacagtgtacgtctttgccaagaaggactcaaagtacgcatacacaggggag
tgccgctcctgcctggagaactcctcgcggcccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaggtgcccatcatcatagtgttccgagccctgggctttgtttcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaagccctccctggatgaggcctttgtgatccaggagcagaacgtggccctgaacttc
atcggttctcgtggtgccaagcccggtgtcaccaaagaaaggaggatcaaatacgccaag
gaggtgctgcagaaggaggtgctcccccatgtcggagtcagtgacttctgtgagaccaaa
aaggcctatttcttagggtacatggtccacagactgctattggctgctctgggcagaaga
gagctggatgacagggatcactacggcaacaaaagattggacctggctgggcctctgttg
gctttcctgttccgaggaatgttcaagaacctgctgaaagagatccgcatctacgcccag
aagttcattgacagagggaaagacttcaacctggagttggccatcaagacgcgcatcatc
tccgatggcctgaagtactctcttgccacggggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgttgaaccgcttgacctttgcctcaaccctctcc
catcttcgacgggtgaactcccccatcggtcgagacggcaagctagccaagcccaggcag
cttcacaacacgctgtggggcatggtgtgccctgccgagacccccgagggtcatgctgta
ggcctggtgaagaacctggccctcatggcttacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcacctgcagcc
atcgcagatgccacaaagatctttgtgaatggctgctgggtgggaatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacagatgccgggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaagagacagtgatgctggccatgacccctgac
gacctccaggagaaaggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccatgtgctctactacccccagaaacccttagtcacc
actcgctctatggagtacctgcgtttcagagagctcccagcaggtatcaattctattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctataaagaacaagagtcgaag
aaaggttttgatcaggaggaagtctttgaaaaacccacacgcgaaacatgttcgggtatg
aggcacgccatttacgacaagctggacgacgacggcctgatagctcccggcgtgcgcgtc
tccggcgaggacgtgatcatcggcaagacggtgaccctaccggagaacgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgaa
acgggcatcgtggaccaagtcatggtcacactcaaccaggagggctacaagttctgcaag
atcagggttcgctctgttcgtatcccccagattggtgacaagtttgccagtcgacacggg
cagaagggtacttgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccatgccatcccctctcgtatgacagtcggccat
ttgatcgagtgcctgcagggcaaggtttcagccaacaaaggggagattggtgacgccaca
cctttcaacgatgcggtcaacgtgcagaaggtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggttttaccggccgtaagattacctctcag
atcttcctcggtcccacatactaccaacgcctaaagcacatggtggacgacaagatccac
tcccgggcccgaggccctgtccagatcctcaacagacagcccatggagggcagatcacgt
gatggaggtcttcgttttggggagatggagcgtgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtctgacccctaccaggtccacgtctgcaac
ctctgtggcctcatggccatcgccaacacccgtacacacacctacgagtgcaggggctgt
cgcaacaaaacacagatctcactggtcagaatgccatacgcctgcaagctgctcttccag
gaactcatgtccatgagtatcgcccctcgcatgatgaccagttag
DBGET
integrated database retrieval system
