Oncorhynchus nerka (sockeye salmon): 115130742
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Entry
115130742 CDS
T07952
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115130742
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115130742
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115130742
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115130742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
115130742
NCBI-ProteinID:
XP_029518021
LinkDB
All DBs
Position
LG6:complement(39990751..40033138)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRHPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKGLIQALKTLQANTKGFKLKDFLHDNETLSTFLLRNASFSEHAVRQIIEADVNLE
KVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESHFLHNL
DFLKPIRKDVRTDPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFLKENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAYDNTSTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRELG
GMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSKLAGSEWTVEDVSNFLTKHSQD
THPHGTAVTWREVFNETDQAIMSISHFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGENRKTDFSQNKRRSCEAVCIEEEPA
HLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PEPFLSSCRNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICESAFVP
PDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDNHLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDADPESRETDFLSGSDGKGSYKVTGWSLKRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQRLLSA
LTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPACACSC
DGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLKNKIWV
NEFRYGGFSLGARSTNVLPAADEIDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRSNLPPGKDPSKFGIRAFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVMDTTPL
SSRQAEEKIAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgttgttgtggaagaactttacctacaggagaagg
caaacgctccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgaatgtcatttccccaacaaggcc
atgccctcggcgggcaccctgccctggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgccaccccactcctggagagtcccccggggtcgtgggcaacttcaacgagtcc
ataatctctcgtctgttctccgatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggatggctttaaaggcctcatccaagccctgaagacactacaggccaacaccaaa
ggattcaagctgaaggatttcctccacgacaatgagaccctgtccactttccttctgcga
aacgcttccttctcggaacacgccgtgcgccagatcattgaggccgacgtgaacttggaa
aaggtgctggtcaaaggctttggtgtccacctgagggacttgtgcagcagcaacggcacc
agagtagaggactttgtgaccatcacagacagcaaggtgtccagtctggtccagaagatg
ctctgcgtgtccccaggctcctggctcaaccaggcagaaagccacttcctccacaacctg
gacttcctcaaacccatacggaaagatgtgaggactgaccctgaagccgtccagcaggtg
gccaaggctacagacaaactcctggagagcctgggctccctggccttggagctggccagc
atgaagagttggagagacctgcgtaacgagatcatcttcctcaaggagaacgccacatcc
tcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggccatcccgagggtggc
ggactaaagatcaagtccctcaactggtacgaggacaacaactacaaggctctgttcggc
aaccacaacacaaccaacggggaggagccaatctctgcctacgacaacacatccactcca
tactgtaatgctatgatgaggaacatggagtccagccccgtgtccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccccgacaccccagccacacag
aagatcatccacgaggtgaacagaacattccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaaattaagcccaaggtctggaccttcatggagagcagcgaacacatg
gacctagtaaggaccctattgaagaacaatggcactggcagcttcttcacctccaaactg
gcgggctcagagtggactgtggaggacgtctccaacttcctgaccaaacattcgcaggac
acgcatccccacggtacagccgtcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatatcccacttcatggagtgtgtaaacctggataagatggagcccgtggcc
aatgaggaaaggatggtcaacaaatccatggcgctcctggacgataggaagttctgggcg
gggattgtgtttccagatattgaggccaacagctctgaactgccggccaacgtcaactac
aagatccgcatggacatcgataacgtggagcgcaccaacaagatcaaagacggatattgg
gaccctggtcctcgtgctgacccatttgaggacctgcgctacatctggggtggcttctct
tacctccaggacatcatcgagcatagcatcatcacagcagtaactggcgtcaaggagaag
acgggagtctatatccaacagatgccctacccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtgtacgagaaggaggcaaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgcta
atttctgccggcctgctggttgtgctgctcaagatggggaacctgctgccctacagtgac
cccggcgtcatcttcctgttcctgggttcttttgccgtggtaaccatcatgcagtgcttc
ctcatcagcacaatgtttgcccgtgccaacttggcggcggcatgcgggggcatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactatgtgggctttggg
gccaaaatagtcgctagcctgctgtccccagtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccagtggaacaacctgttcaatagccccatg
gaggaggacgacttcagcctgaccaccgccatcatcatgatgtacttcgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccctggtcagtatggtattcccagg
ccctggtatttcctcttctccaagtcctactggtttggagaaggggaaaacaggaagact
gacttcagtcagaacaagagaaggagctgtgaagctgtctgtatagaggaagagccagcc
cacctgaaaactggtgtcttcatagagaacctagtcaaggtgtaccggcacgggaagaaa
ctggctgtggatgggctgactctgggcttctatgaaggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccactatgtcgattctaacgggactgtttccgcctacc
tctggcactgcttacatcatgggaaaagacatccgatcggagctgagtgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgtcgaggagcac
atctggttctatgctcgcctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagatactggcctgccgcacaaacgcacttccaggaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggcctttgtcggggggtcaaaggttgtg
attctggacgagcccactgccggggtcgacccctacgcccgcaggggcatctgggacctc
ttgctccaatatcgtctaggtcgtaccatcatcctctccacccaccacatggacgaggcg
gacatcttgggcgaccgcattgccatcatctcccacggcaagctgtgctgcgtgggctcc
tccctcttcctgaagaaccagctgggtacaggctactacctcaccctggtcaagaagggc
ccagaacctttcctcagctcctgccgcaactcctccagtaccgtctccttaactaagaag
gaggaggattgtccctctgagagcagctctgacgcaggccttggcagcgaacacgagagc
gaagtagctaccatagaaactgctcaggcagcttccatctgtgaaagtgccttcgtgccc
cccgacgtctccctgatctccagcctgatcttcaagcacgtcccggccgcccgcatggtg
gaaaaccttggccacgagctcatctacgtcctaccctacggcgccgccaaggacggagcc
ttcgtggagctcttcaaggacatggacaatcacctccctgacctgggcatatccagctat
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaacggagtt
gacactgaagttccctcagacggtacactccccctgcgcagacgtcgtagaaatcatgcc
tttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccagattgat
gacgacaacaatgaacataacgactcggacgcagacccagaatccagagagacagacttc
ttgagcggatcggacggtaaaggctcctacaaggtgacgggatggagtctgaagaggcag
cagtttgtggccttgatttggaagaggtttctgtacgctcaacgctccagaaaaggtttc
tttgctcagattgtactccctgctgtgtttgtgtgcattgccctggtcttcagtctcatc
gtcccacctttcggaaagtaccccagcctggagctgcagccatggatgtacgaagaacag
tccctcttcatcagcgatgacgcccctgaagacgctagcacacaacggttattgagtgcc
ctcaccgaaggacctgggtttggaacgcgctgcatggaaggacagcccatacctgacact
ccctgtacgatgggtgacgaagactggtccataccggaggtcccagagacccttctggaa
ctcttccgcacaggtaactggaccatggaggagccgtcccccgcatgcgcctgcagctgt
gacggccgcaagaaaatgctccctgagtgtcctgctggagccggaggactgccaccccct
cagatgaagatcagtgagacagacaccctgcaaaatctgaccaacagaaacatctctgac
tatctggtgaagacctatgcagagatcattgggaaaagtttgaagaacaaaatctgggta
aatgaatttaggtacggtggcttctcattgggtgccaggagcaccaacgtcctccccgca
gctgacgaaattgacgacgccatcgctcgagtgaggaagatttttgaattggagaagggt
gcagccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaagggatggcacagcatgggagccttcctcaac
gtgatgaacaacggcatcctgcgctccaacctgccccctggcaaggaccccagcaagttt
ggcatccgcgccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtcctggtgtccatctgcgtgatctttgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctttactggacggccaacttcatctgggatatg
tgtaactacatcgtcccggcaacgctcgtcatcatcatcttcgtctgcttccaacaaaag
gcctatgtgtcgtccaccaacctgccagtgctggccctgctgctgctcctctatggctgg
tctatcactcccctgatgtacccggcatccttcttctttaagatccccagcacggcctac
gtggtgctgacctccgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtc
atggaactcttcggagacaacgaaattgggggtattaacaacatcctgaagaacgttttg
ctgatcttccctcacttctgtcttggccgaggtctcatcgacatggtgaagaaccaggcc
atggccgacgctctggagagatttggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtccttttccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtgggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcaaaagcca
gttgtagaccgcctgtgtgtgggcatccctcctggagagtgctttggcctcctgggtgtg
aacggagctggaaagaccaccacattcaaaatgctgacaggagactccatggtcaccagt
ggagaagctttcctggctggaaaaagtatactgcgggagatagacgaagtgcaccagaac
atgggctactgtccccagtttgacgccatcaacgaactgctgacaggcagagagcacctg
gagttctacgcagtcctgcgtggagtgcccgagaaggaagtgtgtgaggttgctgaatgg
ggcatccgtaagctgggcctagtaaagtatgtggacaaggcggcaggaagctacagcgga
ggaaacatgaggaaactctccacggccatggccctaataggaggaccacccgtcgtgttc
ctggacgagcccactactgggatggaccccaaagcgcgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccttgtgcaccagaatggccatcatggtcaacggcagattccgttgcttggggagc
gttcagcacctaaagaataggttcggagacgggtacaccatcatcctgcgtgtggcgggg
gcggaccctgacctgccgccggtgatgaagttcattgagagcgagctgccgggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgccctcctctctcacctccctg
gcacacatcttcagcatcctggccaagaacaaggacctgcttcggatagaagactactct
gtgtcgcagaccacactggaccaggtgtttgtgaactttgccaaggaccagagtgacgat
taccactcaaaagacaattcagttaagcgcaaagaggcggtgatggacactaccccgctc
agctcgcggcaggctgaagagaagatagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
