Oncorhynchus nerka (sockeye salmon): 115130756
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Entry
115130756 CDS
T07952
Name
(RefSeq) protein transport protein Sec24B-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115130756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115130756
Membrane trafficking [BR:
one04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
115130756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
HpaB
TOR1L1_N
Motif
Other DBs
NCBI-GeneID:
115130756
NCBI-ProteinID:
XP_029518047
LinkDB
All DBs
Position
LG6:40438115..40472658
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AA seq
1219 aa
AA seq
DB search
MGIVLLLVTAFRVSLSPCAFLIKDECDQEMSAPGFTSLKTSLGHSLNSTPNGGAAPPYQN
GPGGQTYPSTYPLTGYYGAGPQQQGNPTIPGQCAPAPPKAQITNNDHSAYCHQQPLQPTA
APTVAPSVYGATQGSHPPSLPYGTPTTLPTSATPPNPHHTPSFQQPAPYAQPGAYYGQQQ
YPTSQTQHHPQQPNLVLAPPTSPGAPLYPIVSYPSVPGSSQYGTLRSSQAPTGPAAVPNL
MGAPLHQYAPGNDTSHPVSTAAVPPGYSMAPPGQPATVNGQGNADPVLQHYDQSHQAAMT
HDHYRGGVKHNTGGADRDMPPLGIPSTSVNSSPGHQQGMHYGYLANSGTSSANTAANVAP
SSSSSDEEEEEEDEEAGGDSSSTTTGSASPVPNSYDSLEGGSYPEFSNPPSTDMPNQPVY
QQRPVSRTDSSPSHGGYNQTGYQHLPQPFPNMSQLSAALGGLSGVPELEVEALRPVNLLQ
ERNLLPHQPLDAPEPNLSADLKKANCSPDTFRCTLTNIPQTQALLNKARLPLGLLLHPFR
DLAQLPVITSNTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPDEFMYNPVTRSYG
EPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEGGYLNVFCHTLLENLDK
MPGDTRTRVGFITFNSTIHFYNLHESLSQPQMLVVSDIDDIFIPTHDSLLVNLKESRALV
RVLLTSLHSMFSQTRETHSALGPALQAAYKLMSPTGGRVSVFQTQLPTLGPGLLQSREDP
NQRSSTKGVQHLGPATDFYKKLALDCSGQQIGVDLFLLSSQYSDLASLACISKFSAGSIF
YYPSLHHVHNPAQLDKFQKDLERYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLL
SLANINPDSGFAVQMSIEESLADTSLACFQSALLYTSSKGKRRIRVHTLCLPVVSQLSDV
YAGADVQAITCLLANMAIDRSISSSLSDARDALVNAVVDSLSAYKNTVSNIQQSGLIAPA
ALCLFPLYVLALLKQKALRMGTSTKLDERVFAMCEFKSQPLQQIMRAVHPNLYRLDTMSD
QGALHLNDCIVPQPHLLHLTAEKLTREGAFLMDCGSVFYLWIGKCCNDVFIRDVLGCPNH
ASIPPSMTQIPELETPLSERLRALLAWLQDSRPFSSTLHVVKDDATAKTSFFQHLVEDRS
ESALSYYEFLLHIQQQMSK
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgggaatagtactgctcttggtgacagcctttcgtgtgtctttgtcaccctgtgccttt
ctgataaaggacgagtgcgaccaagagatgtctgcgccgggttttacgagcctgaaaacc
tctctcggtcacagcttgaattcaacgccgaatggtggagcagcacccccctatcagaat
ggtccaggggggcagacttacccatccacatatcctttgacggggtactatggagccggg
cctcaacagcagggcaacccaaccattccaggccagtgtgcccctgcccccccaaaagct
caaatcacgaacaatgatcacagtgcttactgccaccagcagccgctgcagcccactgct
gcacctactgtagccccctctgtatacggagcaacccaaggctcccaccctccctctctg
ccctatggcacccccaccactcttcccacctccgctacccctccaaacccccaccataca
ccttcattccaacaaccagccccatatgcacagcctggggcctactatggacagcagcag
taccctacctcccaaacgcaacaccacccccagcagccaaacttggttttggcacccccc
accagcccaggtgctcccctgtatcccattgtctcgtacccctctgttccgggaagcagc
cagtacggtacattgcgttcctcccaggctcccaccggcccagcagctgttcccaacctg
atgggcgctcccctccaccagtacgccccaggaaatgacaccagtcacccagtatctact
gcagcggttccccctgggtatagcatggctccacccggccaaccagccacagtcaacggc
cagggtaatgcagacccagtcctccagcactatgaccaaagtcaccaggcagccatgaca
catgaccactacagaggaggagtcaaacacaacactgggggtgctgacagggacatgcca
cctttaggaatcccatccacttcagttaattcctccccagggcatcagcaaggcatgcac
tacggatatttagccaatagtggcactagctctgccaacaccgccgccaacgttgccccc
tcgtcatccagctctgatgaggaggaggaggaggaggatgaggaagcaggcggggatagt
tcctcaaccaccaccggcagtgcgtccccggtgcccaacagctacgactccctggaaggc
ggcagctacccagagttctccaatccaccgtctaccgacatgcccaatcagccagtctat
cagcagaggccggtctccaggacagactcctccccctcacacggcgggtacaaccaaact
ggctatcagcatttgccacagcccttccctaacatgtcccagctgtctgcggccctcggg
ggactgagcggtgtaccagagctggaggtggaggcgctgcggccggtcaacctgctgcag
gagaggaacctgctgccccaccagcccctggatgccccagaacccaacctcagcgctgac
ctaaagaaggccaactgcagcccggacacgttcaggtgtaccctgaccaacatcccccag
acccaggccctgctgaataaagcccggcttcccctaggcctgctcctgcaccccttcaga
gacctcgcacaactcccagtgatcacgtccaacaccatagtgagatgccgctcctgtcgc
acctacattaaccccttcgtctccttcctggaccagaggagatggaaatgcaatctctgt
tacagggtcaacgatgttcctgatgagttcatgtataacccagtgacccgctcatatgga
gagccccacaagaggccagaggtacagaactccactgtggagttcatagcctcttcagat
tacatgctgcgtccccctcagcctgcagtatacctgtttgtgttggatgtgtctcacaac
gcggtggagggaggctacctgaacgtcttctgtcacaccttactggaaaacctggacaag
atgcctggggacacgcgcacccgagttggcttcatcaccttcaacagcaccatccacttc
tacaacctccacgagagcctctcacagccccagatgttggtggtctccgacatcgacgat
atcttcattccgacccacgacagtctcctggtgaacctgaaggaaagcagagcgctggtg
agggtactgttgacctccctacacagcatgtttagccagaccagggagacccacagtgcc
ctgggcccggcactgcaggctgcctacaaactcatgtcccccacggggggccgcgtctcc
gtgttccagacccagctacccacgctgggcccaggtctgttgcagtcccgggaggacccc
aaccagaggtccagtaccaagggggtccaacacctgggcccagccacagacttctacaag
aagctggccctggactgttctggccaacagataggagtggacctgttcctcctcagctcc
cagtactctgacctggcctcactagcctgtatatctaagttctcagcgggcagtatcttt
tactacccctcgttgcaccacgttcacaacccggcccagctggacaagttccagaaggat
ctggagcgctacctcaccaggaagatcggcttcgaggccgttatgaggatacgctgcacc
aaaggcttgtccatccacacgttccacgggaacttctttgtgcgctcgacggacctgctg
tccctggccaacatcaacccagactcgggcttcgccgtgcagatgtctatagaggagagc
ctggccgacacctcactggcctgcttccagtctgcgctgctgtacacctccagcaaaggg
aagaggcggatcagggtccatactctgtgtctgccagtggtgagccagcttagtgatgta
tatgccggggctgacgttcaggccatcacctgccttctagccaacatggccattgaccgg
tcgatatcgtcaagcctgtcggatgcccgggatgccctggtgaatgcggtggtggactct
ctgagtgcatacaagaacactgtatctaatatccagcagtctggtcttatcgcccctgca
gccctgtgtctcttccccctctacgtgctggcactactcaaacagaaagcactgcgcatg
gggaccagcaccaagcttgacgagcgtgtcttcgccatgtgtgagttcaagagccagccg
ctgcaacagatcatgcgtgcggtccaccccaacctctaccgcctagacaccatgtcagac
cagggggctctccacctgaacgactgcatagtgccccagcctcatctgctgcacctcacg
gctgagaagctgaccagagaaggagcgttcctcatggactgtggcagcgtcttttacttg
tggattgggaaatgctgtaatgatgtgttcattcgggacgtgttgggatgcccaaaccat
gcttctataccccctagcatgacccaaattcctgagctggaaacccctctgtctgaacga
ctgcgtgcactcctcgcctggctacaggactcgagacccttcagctcaactcttcacgtc
gtgaaggatgatgctacagcgaagaccagctttttccagcacttggtagaggaccggtcg
gagtcggccctctcctactacgagttcctgctccacattcagcaacagatgtccaagtag
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