Oncorhynchus nerka (sockeye salmon): 115130834
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Entry
115130834 CDS
T07952
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115130834
Domain-containing proteins not elsewhere classified [BR:
one04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
115130834
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GFIT
Motif
Pfam:
DUF4757
CH
LIM
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
115130834
NCBI-ProteinID:
XP_029518200
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All DBs
Position
LG6:complement(45411057..45549937)
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AA seq
1151 aa
AA seq
DB search
MASPAADRGLPHQRHPLSESASEPAFLEAQKWIEAVTGRCFNDKDFRGGLENGILLCELL
SSIKPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDISTRPNANRVA
DCSRKLKNVLITIYWLGRAANSCTSYNGPTLDLKEFEGLLSQMRKEAEDTESPQRSIRDS
GYIDCWDSERSDSLSPPRHGREDSFDSLDSFGSRSRQTPSPDVVVARGIGSDGRGSDSES
DAGPHGGRKLPDVRKDDMLARRTSVSEPRVMVPFNQYLPNKSNASGYVPTPLRRKRGDHE
SREEGSGGGGGSRKSWSTATSPIGGDIPFRFSHRAASVSDDPESVSMIDMRCEEDAILPH
HSQVRHELMHNQYNMMKEEEDHWQDDLARWKSRRRSVSQDLIKKEEERKMMEKLMTGEGG
AISQRRKSIKTYREIVEEKERRENDLREAYRLARTPEEAALVLHRYAQRFTISEAVLERL
QLPKLLDRSISEDPTATTNTRLTLTPTSCSPTPTSPEEDTNGSLKYLRQQSLPAPKFTAT
VEAQVVGFPQGLSLRPQIRSRKPEPNPSIRAVSPKSVPLLMPKPYNQPKGMQMLVGPRPG
KVDGLLRVNGDMGNDEVTTPESEGRTSPLRFYPSPATPTASSDGSDTHPCEATPPPTHSP
SPRASPLPAMPSSSVPGESDAQKKDNAQESTPPSRPTSLPSELQSTECLVETGGRSAAGP
LGEEPNTTETAVQPSPATESQQAPKEQTEVCMNATSTRQNTTILRPVLSEHATQQAQPMT
APVSEPSLEVSQRADEVATLADPGPVRNKPPREAPTTEGAEQERGTAAVTQVSSPVVAQA
KRGDRWSWDPNEERKRQERWQQEQERMLQEKYQHEQEKLKQEWERAQREVEDEERRYHEE
ERRILEETVAPLTPLSSTLPSPIRGDTPAPMDRQDTIVRSLADWERKQELLERQGGNTER
VVWKGQDNDRSSDISTASRDESLKTAVSSISQNSSQADKLTQSLQNGQRAPPTMAVPQPP
NKKQNTEVLLDCTKPSQQAPSRDRRCGSIESMGPSPSNSPTTCPSDMPQSPNRSVSGKKL
CSSCGHPLGKGAAMIIETLSLYFHIQCFKCGVCKGQLGDTTTGTDVRIRNGLLNCHQCYI
RSRSAGQPTTL
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtcccgctgcagatagaggactaccacaccagcgacatcccctctccgaatcg
gcctcggagcccgcgtttctagaagcgcagaaatggattgaggcggtcacaggcagatgc
ttcaatgacaaggacttcaggggaggcctggagaatgggatcctgctgtgcgagttgctg
agctccatcaaacctggattggtgaaaaagatcaaccgattacccactcccatcgctggc
ctggacaacctgagtgtgttcctgcgtggctgtgaggagctgggactgaagggctctcag
ctgtttgaccctggggacctgcaggatatctccacacgccccaacgccaacagggttgcc
gactgcagtaggaaactcaagaatgttctgattaccatatactggctgggccgggctgcc
aacagctgcacctcctacaacgggcccacactggacctgaaggagtttgaaggcctgcta
tcacagatgcggaaggaggcggaggacacggagagcccccaacgcagcatacgggacagc
ggatacatcgactgctgggactcggagcgtagcgactcactctccccgcctcgccacggc
cgagaggactccttcgacagcctggactcattcggctcacgctccagacagacgccctcg
ccggacgtagtggtcgcccgcggcattggcagtgatggccgtggcagcgactccgagtcc
gacgccggaccccacgggggcaggaagctgccagacgtgcgcaaggatgacatgctggct
cggcggacctcggtgagcgagccccgcgtgatggtgcccttcaatcagtacctgcccaac
aagagcaacgccagtggctatgtgcccacaccgctgcgcaggaaaaggggtgaccacgag
agccgggaggagggcagtggagggggtggaggcagccgcaagagctggagtaccgccacc
tcgcccataggaggcgatatacccttcagattcagtcacagagctgctagtgtatcagat
gacccagagagtgtgagtatgattgacatgcgttgtgaggaggacgccatcttgccacac
cacagccaggtgcgccacgagctcatgcacaaccagtacaacatgatgaaggaggaagag
gaccactggcaggatgacctagcccggtggaagagtcgcaggagaagcgtctcccaggac
ctgattaagaaggaggaagagaggaagatgatggagaagctgatgacgggtgaggggggg
gccatctctcagaggaggaagagcatcaaaacctaccgagagattgttgaggagaaggag
cgtcgtgagaacgacctccgcgaggcttaccggttggcccgcacccctgaggaggcagcg
ttggtcctccaccgctacgcccagcgcttcaccatcagtgaagcggtgttggagcgcctg
caactgcccaaactgctggacaggagcatctctgaggatcccaccgctaccaccaacaca
cgtctcaccctcacccccacttcctgttctcccacccccacctccccggaagaagataca
aatggctccctgaagtacctgaggcagcagtcgctcccggcacccaagtttaccgctact
gttgaggcccaggtggtggggttcccccagggtttgtctcttcgcccccagattcggtcg
cgcaagcctgaaccaaacccctcgatccgggccgtctcacccaagtctgtgcctttgctg
atgcccaagccttacaatcaacccaagggcatgcagatgctggtgggacccaggccaggc
aaggtggacggcttgctgcgagtgaacggcgacatgggaaacgatgaggtcaccactcca
gagagcgagggaaggacctcccctctacggttctacccctcccctgccacacctacagcc
tcctctgatggttccgacacacacccatgtgaggccactcccccacccacacacagcccc
tcccccagggcaagcccattaccagccatgccatcatcttcagtgccaggagaaagtgat
gcccagaagaaggataatgcacaggagtctacaccgcctagccggcccacctcactgccc
tcggagctgcagagcacagagtgtcttgtggagacgggaggcaggtctgctgcaggccca
ctgggggaggagcccaacacaacagagactgcagtacagccctctccagctacagagtca
caacaagctcccaaagaacaaacagaagtgtgtatgaatgccacatcgactagacagaac
accactatcctccgtccagtcctatcagagcacgccacacaacaagctcaaccaatgacc
gcaccggtcagtgagcccagcctggaggtgtctcagagagcagatgaagttgctaccttg
gctgatccaggacctgtcagaaacaaaccaccacgtgaagctcccacaacagagggggca
gagcaggagcgtggtacagcagcggtcactcaggtgtcatccccggtagtggcccaggct
aagcggggtgaccgctggtcttgggacccaaatgaggagcgaaagcgtcaggaaaggtgg
cagcaagagcaggagcgcatgcttcaggagaagtaccagcatgagcaggagaagctgaaa
caggagtgggagagagcgcaaagagaggtggaagacgaggagaggagataccatgaggag
gagcgaaggatactagaggagactgtggcccctctgacccccctctcctccaccctgccc
tcgcccatccggggggatacccccgcgcctatggaccgccaggacaccatcgtccggtcg
ctggccgactgggaacgcaagcaggagctgctggagagacagggggggaacaccgagaga
gtggtatggaaaggacaagataacgacaggagtagtgacatcagcacagcgtccagagat
gagagtctgaaaacagcagtcagctcaatcagccagaacagcagtcaggcagacaagctg
acacagagtttgcagaatggtcagagagcaccacccaccatggccgttccccagcccccc
aacaagaaacaaaatacagaggtcttactagactgcaccaaacccagccagcaggcgccc
tctcgggacaggaggtgtggctccattgaatccatggggcccagtccatcaaactcaccc
accacatgcccatctgacatgcctcaatctccaaacaggtcggtgagcggtaagaagctg
tgctccagttgcggtcaccctttgggaaaaggggcagccatgattattgagaccctcagc
ctttacttccacatccagtgctttaagtgtggggtctgtaagggacagctgggtgacacc
accacggggacagacgtgaggatccggaacggcctcctcaactgccaccagtgctacatc
cgctcccgctcagccggccagccaaccacattgtga
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