Oncorhynchus nerka (sockeye salmon): 115130853
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Entry
115130853 CDS
T07952
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115130853 (upf3b)
03015 mRNA surveillance pathway
115130853 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115130853 (upf3b)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115130853 (upf3b)
mRNA cycle factors
P-body specific factors
115130853 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
115130853
NCBI-ProteinID:
XP_029518240
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All DBs
Position
LG6:46272783..46281699
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AA seq
479 aa
AA seq
DB search
MKEDKENTRPIEKIMEIKCEDTEKTEKQKPEKKEAMTKIIIRRLPPSITKEELEDQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRQRDEERRKWREEDRRKRKEAEKFKKGD
KTAEKDKDQAKEEPKIKLLRKPDRGDDVDVEKPKEKSKKPEKDKMKDDRGPGGSDMKKRQ
NHECREDRGSRKADEDGHKEGHRDGHKDFRERDIERYRDRERDRERERRQKEKERIRRQD
EDRRRRRERHDGENSYRKREDEGKKEKGDRVWEKRKGENAGDSVSHTSSHTDKPKKSEET
LREEKAKRDRLRNKDRPAIQLYQPGARNRGARGGGGGESHAGERKSESESKRSQEKGDE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggacaaggaaaacactcgtccgattgagaaaattatggagataaaatgcgaa
gatactgaaaaaacggagaagcaaaagccggagaagaaagaagcaatgacgaagatcatt
atccgacgtctgcctcctagcataaccaaggaggaactggaggatcaattgcagccactt
ccagaagtagactacctcgaatttttctccaatgacagcagcatgtacccccacgtcttc
gccagagcatacatcaacttcaagaatcaggaagatattgtccttttcagagaccggttt
gatggatatgtgttcattgataatagagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaaaaaggagtaagaaaaaggatgccaaaagtggaacaatc
gacgaagatgctgactacaagaaattcctggagatttataatggtgatgatgaaaagttt
acatccactcctgagactctactggaggaaatagaggctaaaacaaaggaactagtggct
aagaaaacgactcccctcttggacttcttgaagaacaaacagagaatccgtgaggaaaag
aaagaggagaggaggagacgagagctagaacggaagcgccagcgggatgaggaacgtcgg
aagtggagggaggaggacaggaggaagcgcaaagaagccgagaagtttaagaaaggggac
aaaactgcagagaaagataaagaccaggcaaaggaggagccaaaaatcaagctcctgaga
aaaccagaccggggagatgacgtggatgtggaaaagcctaaagagaagtcaaagaaacct
gagaaggacaagatgaaagacgacagaggtccagggggttctgatatgaagaagcgccaa
aaccatgaatgcagggaggataggggatcacggaaagctgatgaagatggacacaaagag
ggacatagagatggacacaaagacttcagagagcgagacatagaaagatacagggaccgc
gaacgagacagggagagggaacggcggcagaaagagaaggagcgcatcagacgacaggat
gaggatcgacgaaggaggagggaacggcacgacggagagaactcgtacagaaagcgagag
gacgaagggaaaaaggagaaaggagatcgtgtctgggaaaagagaaagggcgagaatgca
ggagactctgtaagccatacttcaagccataccgataagcctaaaaagtcagaagaaacc
ctgagggaggagaaagctaaaagagatcgtttaagaaacaaggatcggcctgccattcag
ctttaccagccaggtgctaggaaccggggagctcgaggtggtggaggaggagaatctcat
gctggggagagaaagtcagagagtgagagcaagagatcccaagagaagggagatgaatga
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