Oncorhynchus nerka (sockeye salmon): 115130910 Help Entry 115130910         CDS       T07952                                  Symbol pcdh1 Name (RefSeq) protocadherin-1 isoform X1   KO K16498   protocadherin delta 1 Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:one00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     115130910 (pcdh1)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:one01009]     115130910 (pcdh1)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:one04515]     115130910 (pcdh1) Protein phosphatases and associated proteins [BR:one01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      115130910 (pcdh1) Cell adhesion molecules [BR:one04515]  Cadherins   Protocadherins    115130910 (pcdh1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_CELSR2_9th Cadherin_2 Cadherin_4 SGBP_BT4661-like PDGLE Syndecan NnrU Motif Other DBs NCBI-GeneID:  115130910 NCBI-ProteinID:  XP_029518349 LinkDB All DBs Position LG6:complement(51301419..51599235) Genome browser AA seq 1256 aa AA seqDB search MADTLMSRAEGILRVVSSFSFIRCVLLSMLRSAQSCLIESPMRFQSSGVMVLRWDATLVL AAMLLVCCAADPTDILYRMLEEQPPNTLIGSLASDEGLPDSGHLYKLEVGTPYLRVDGKT GDIYTTEVPIDRETLRDCRNLFEGDKCFLEFEVSITDLKQGQGPRLIEGRIEVQDVNDNT PQFTSPILMLSIPENTHIGALFSIPMASDKDSGHNGVAEYSLSAGPDADQLFSLQVAEDT DEKQPQLIVMGNLDREQKDSYDLNIRVVDGGTPPRASSALLRVTVTDQNDNAPKFERSHY EAELAENSPVGHSVLQVKANDADMGTNGEIDYSLHQASDAVQRLLRIDRSTGIIYVKGLV DREEESFLKFFVVAKDRGPNSKSSKVLVTINVKDQNDNAPAIEIRGIGLVTHHDGVANIS EDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESANDRKRKYFLQTTTLLD YERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNAPVFSPTLFEVDFAEENQPGDKV LDVVATDADSGSNAELTYSIIMDSTTKGLFEIDPKTGEVHVRNTLDREHREQYEFHVAAA DKGSPSLRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVIDADKGENA MVRLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLRAVDAGDPPRSSYVGVTINV LDENDNSPYVTKPSNSSYKYLPPLTTPETRVEVVEAEDIDTGPNAEMVYSITGGNPYGLF HISPNNGEITLAQEFTRKHNGLHRLVVKVSDKGKPPRHTTALVHIFVNETMGNITLIESL VGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILVIVVVVVIRHRMQKDTKSGY QAGKKESKDLYAPKAGPKNGKGKKSKKGKVPKPTKPLEEDEEASLQKGLNFNLINDSVND SPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQDLPATNTFVGTGD NNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTANQAQDLQDPSQHSYYDSGLEESET PSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGNCTHECTEFG HSDTCWMPGQPSPNRKSSTKNAPKLSTFVPYLESEGQDHLMANGSPKPMADERGSAGGGS GGSKVANIRFLPPYSSAFSGGSDSGKGCEEIPLSQAAEYHSATTPTNQGSKREIYL NT seq 3771 nt NT seq  +upstreamnt  +downstreamnt atggcggatactttaatgtcacgcgcggaggggattctgcgggtcgtttcaagcttctcg tttattcggtgtgttttactgagtatgttaagatcagcacaatcttgcctcattgaatca ccgatgcgtttccagtcaagcggagtgatggtgctgaggtgggatgccacgttggtgttg gcggccatgcttctggtttgctgtgccgccgatcccactgacattctctaccggatgctc gaggagcagccgcccaacacgttgatcggcagcctggcatcggacgagggcctccccgac tcaggccacctgtacaagctggaggtgggcaccccttacctgcgcgtggacggcaagacg ggagacatttacaccacagaggtccccatcgaccgtgagacactgcgggactgccgcaac ctgttcgagggcgacaagtgcttcctggagttcgaggtgtccatcacggacctgaagcag ggccagggaccgcggctgatcgagggccgcatcgaggtgcaggacgtcaatgacaacaca ccccagttcacctcgcccatcctcatgctgtccatcccagagaacacacacatcggggcg ctcttctccatccccatggccagcgacaaggactcgggccacaacggcgtggccgagtac tcgctcagcgccgggcctgacgccgaccagctcttcagcctgcaggtggccgaggacaca gacgagaagcagccgcagctcatcgtcatgggcaacctggaccgcgagcagaaagactcg tacgatctcaacatccgtgtggtggacgggggcacaccaccacgagccagcagcgccctg ctgagggtgaccgtcaccgaccagaacgacaacgcacccaagtttgagaggagccactat gaggctgagctggctgagaacagccctgtgggacactcagtcttgcaggtgaaagccaac gacgctgacatgggtaccaacggggagatcgactatagcctgcaccaggcctccgatgcc gtccagaggttgctacgcattgaccgctccacagggatcatctacgtcaaggggctggtg gaccgagaggaggagagcttcctcaagttcttcgtggtggccaaggatcgcggccccaac tccaagagctccaaagtcctggtgaccatcaacgtcaaggaccagaacgataacgcaccc gccatcgagatccgtggcatcggcctggtcacccaccacgacggtgtggccaacatctca gaggacatgcccatcggcacgcctgtagccctggtgcaggtgtcggatcgtgatgaaggg gagaatgctgtggtcacctgtgtggtggccggggacgtccccttccagctgcggcccgcc agcgagtcagccaacgaccgcaagaggaaatacttcctgcagaccacgaccctgctagac tacgagcgcatcaaggactacaggattgaaatagtagcggtggactccggtaaccctgca ctgtccagcacaaactccctgaaggtgcaagtcaccgacatgaatgacaatgcccctgtc ttctcccccaccctgtttgaggtggactttgcagaggagaatcagccaggtgataaggtc ctggatgtggtggccacagacgcggacagtgggtccaacgcagagctgacctacagcatc attatggactcgaccactaaggggctctttgagatcgaccccaaaacgggagaggtgcac gtgaggaatacgctggaccgtgagcacagggagcagtacgagttccacgtggcggcagcc gataagggctcgcctagcctgagggggacggccacggtggtgatcaaggtgctggaccgt aacgacaacgaccccaagttcatgttgagcggctacagcttctccgtcttggagaacatg cctccgctcagccctgttggcatggtgacggtcatcgacgcagataagggcgagaacgcc atggtgcgactctcggtggagcccgacaatggcaagtttgtcatccagaatggcacaggt actatcctctccagcatatcctttgaccgtgagaaggagagcacatacactttccgcctc agggctgtggatgccggtgaccctcccaggtcctcctacgtgggtgtgaccatcaacgtc ttggacgagaacgataactccccctacgtaaccaagccctctaactcctcctacaagtac ctcccgcctctcacgacccccgagacacgcgttgaagtggtggaggccgaagacatcgac acgggacccaacgccgagatggtctacagcattaccggcgggaacccctacggactgttt cacatctcgcccaacaatggggagatcaccctggcccaggagttcacccgcaagcacaac gggctccaccgtctggtagtgaaggtgagcgacaaaggcaagccaccacgccacaccacc gccctggtccacatcttcgtcaatgagaccatgggcaacatcaccctgatcgagtctctg gtgggtcacagcctctacactcctctggacagagacattgccggggaccccaactatgcg ctggcccagcgcagcaacatcctgtatggcagcctagcgggcatcgccggagtcatcctg gtcattgtggtggtggtggtgatccgtcatcgcatgcagaaggacaccaagagcggctac caggcgggtaagaaggagagcaaggacctgtatgcccccaaagcagggcccaagaatggc aagggcaaaaagagcaagaagggcaaggtgcccaagcccaccaagccactggaggaggac gaagaggccagcctccagaagggcctcaacttcaacctcataaacgatagtgtcaatgac agtccccggatccacctgcccctcaactaccccccgggcagccccgacctgggcagacac taccgctccaactccccactgccctccatccagctgcagccccagtccccctctgcctcc aagaagcaccaagccgttcaggacctgcccgccaccaacacctttgtgggcacaggtgac aacaactctacaggctccgatcaatattcggattacagctacaaggcaaacccgccgaaa tacagcaacaaacagctcccccatcgccgagtgaccttctccacggccaatcaggctcaa gacctgcaggacccctcccagcacagctactacgacagcggattggaggaatcggagacc cccagctccaaatcgtcatcggggccccgcattgggcccctggccctgcctgaggaccac tacgagaggaccaccccggacggcagtatcggagagatggagcacccggagaacgatctc aggcctctgcctgatgtggccatgactgggaactgcacccatgagtgtaccgagttcggc cactccgacacctgctggatgcctggccagccctcccccaatcgtaagagctccaccaag aatgcccccaagctctccaccttcgtgccttacctggagagtgaggggcaggaccacctc atggccaacggcagtcccaagcccatggcagacgagcgtgggagtgctggaggtggcagc ggaggctccaaggtggctaacatccgcttcctgcccccttacagcagtgccttctccggg ggcagcgactccggcaaaggctgcgaggagatccccctgagccaggcagccgagtaccat tccgccaccacacccaccaaccagggctccaagagagagatttacctgtga

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