Oncorhynchus nerka (sockeye salmon): 115130935
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Entry
115130935 CDS
T07952
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115130935
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115130935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_16
HrpB1_HrpK
UTP6_C
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
115130935
NCBI-ProteinID:
XP_029518387
LinkDB
All DBs
Position
LG6:52228813..52240709
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AA seq
729 aa
AA seq
DB search
MAAEGSDSEDLNTNGLMEAPSALEAMEAVQLPTEKEEASEENGGGGASEAPEAAAATSYN
MPLAENEEEEDGEFPADFDRLWKLAHDNPQDFSSWTDLLQYCEQESHMTASRRALVAFLA
RYPLCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLPE
SSQRIRSAFEEAVTAAGLDFHSDRLWELYIEWEKEQGDMKAATGVYDRVLRVPTQLYSSH
YEKFKTHLNAHAPKDVLSAVEYEGLLEESKQSHKTEKSELAEGEEELPPGEEKEPTEEEL
IPKMRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLRAWHSYLDWELT
ELGGGGEKEVKTETEPEAMEGQEEEQKEEKEGSKSSEIVAGGDRRVRILFERCLIACALY
EEFWTKYVQYLESQSLDEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLEA
LETSVPGLAMVRLRRAGLERRAGRLDESEALLRDAVAQAKETPHLHAFYSIKLARLLLKL
CKNPSKARGVLQEALEISPDDGKLHLNLLELEVSGDPRGSAEGVQQCVTRALAAPLSPQT
KILFSQRGLQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRVAENGDSEDPEKMSKGEDG
SAVPAPPQAPPTMPHVPMTTPPPPMMGGDMSTVHAGYGGYGSWHQQPQYGGYGGYQQAWN
YNQGYYPPS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctcggattcagaagacctgaacaccaacgggctaatggaggctcct
tcagctctggaagccatggaggctgtccaacttccaacagagaaggaagaggcatcagag
gagaatggtggaggaggagcctctgaggctccagaagcagcagctgcgacatcatacaac
atgcctctggcagagaatgaggaggaagaagacggagagttccctgcggactttgaccga
ctctggaagctggcccatgacaatccacaggacttctctagctggactgacctactgcag
tactgtgagcaagagagtcacatgacagcgtcacgtcgggcgctggtagcctttctggca
cggtacccactgtgctacggatactggaagaagtttgctgacctggagcgacgtgctggc
tacaccaacaaagctcaggaggtgtgtgttcagggtctgaaggccattccccttagtgta
gatctgtggatccactacattaacctgctactgggcacgctcaacatgaacctgccagag
tcctctcagcgcattcgcagtgcatttgaggaggcggtgacggcagcaggactggacttc
cactctgaccgtctgtgggagctgtacatcgagtgggagaaggagcagggagacatgaag
gctgccactggagtctacgacagagtcctcagagtccccactcagctgtacagcagccac
tatgagaaattcaagactcatcttaatgcccatgcgcccaaggacgtcctctcagcagtg
gagtatgaggggttgcttgaggaatctaaacagagccacaagactgagaagtctgagttg
gctgagggggaagaggagttaccacctggggaagagaaggaacctacagaggaagagctg
attccgaaaatgcgagagctcctattggctcgaagagagaaggtgtaccaagacctggag
ggagaggtcaggaagaggtggaactttgaggaagctatcaagcgtccatatttccacgtg
aagcctctggaccggacccagctgagggcctggcactcctacctggactgggagctcacc
gagctgggggggggcggtgaaaaggaggtgaagaccgagaccgaaccagaggccatggag
ggccaggaagaggagcaaaaggaggaaaaggaggggtcaaagagcagtgagatcgttgcc
gggggagaccggagggtacggatcctgtttgagcgctgtctgattgcctgcgctctctac
gaggagttctggaccaagtatgttcagtacctggaatctcagagtctggacgaggcgcgg
ggagtgtttcggcgagcctgtgagatccacctggcccacaaacacaccatgcacctgcag
tgggccaccttcgaggagaggcatggtgacctaacagaggcacggcgagtgttggaggct
ctggaaacctcagtgccgggattggccatggtccggctgcgcagggcggggctagagaga
cgggcgggccggctagatgaatcagaagctctgctcagggacgcggtggcccaggccaaa
gagacacctcacctccatgcgttctactccatcaaactggcccggctgctgctgaagctc
tgcaagaaccctagcaaggcccggggagtcctgcaggaggcgctggagattagcccggat
gacggtaagctgcacctgaacctgctggagctggaggtgtccggtgaccccagagggtcg
gccgagggggtgcagcagtgtgtgacgcgggcgctggccgcacccctctccccacagacc
aagatcctcttctcccagaggggcctgcagtacgctgaggactatgggacctctgtgcaa
agtgtgctaacagtctatgaggagcatcagaagctactgaaagagctcggcaacaagaag
agagtggctgagaacggagacagtgaggacccagagaagatgagtaaaggagaagatggc
tctgctgtgcccgctccaccacaagcccctcccacaatgccccatgtccccatgacgacg
ccacctccacccatgatgggtggggacatgagtacggttcatgcaggctatggaggatat
ggaagctggcatcagcaaccacagtatgggggatacggaggctaccagcaagcctggaac
tacaatcagggttactaccctcccagctaa
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