Oncorhynchus nerka (sockeye salmon): 115130950
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Entry
115130950 CDS
T07952
Name
(RefSeq) nuclear RNA export factor 1-like isoform X1
KO
K14284
nuclear RNA export factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03008
Ribosome biogenesis in eukaryotes
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115130950
03015 mRNA surveillance pathway
115130950
03008 Ribosome biogenesis in eukaryotes
115130950
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115130950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115130950
03009 Ribosome biogenesis [BR:
one03009
]
115130950
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115130950
mRNA cycle factors
Stress granule specific factors
115130950
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
115130950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_6
LRR_9
Motif
Other DBs
NCBI-GeneID:
115130950
NCBI-ProteinID:
XP_029518407
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All DBs
Position
LG6:complement(52446872..52467537)
Genome browser
AA seq
660 aa
AA seq
DB search
MTFRKWYPNLAVVARVRFDQDQEGVVVQRDVTRKGKLPGEHDNRVAGPQFRGGRMSRGPF
RGPIYYDGPARQQRPRGGQMGGFRGPGPGPRVRFEDNYVDVTMNSGSPQDGSSHRRFNPY
RWPNRRGDGQFDRDRRGAGGYRGEGGGGREGGGGGKDKSSWCKMIIPYGRKYDKKWLLTA
LQNLCSVPFTPVQYQIEGHKAQFYLEDACTANALCRVSRQITDTEGYKVIVLMNPCPPPA
ILNTQLKPEDMEHLKQCMAKRFDGSQRALDLNNIRTDPDLVSQNIRAILSRKTFMDAVVK
IIEENIPELVCLNLSNNKLYKLEDVADLISKAPHLKILNLSHNELKSEKELDRLKGLKLV
ELWLDRNPLCDQFKDQLTYISAIRERFPRLLKLDGHDLPPPIVFEVVSPTTTPPCKGSYF
GSEEIKVLIMHFLQQYYSVYDSGNRQPLLDAYHDGASFSLSLPSSQNPNRCSLREYHKDS
RNIKRLKDPSTRFRLLKHTRLNVVALLNELPKTQHDSASFNVDVNTYTTTLLSFTVSGMF
KEVDGKSQDVVRAFSRVFIAVPAGISGLCIVNDELFVRIATTEEIQHAFAATAPTPSSSP
VPTLTAPQQEMLSAFSLKSGMNLEWSQKCLQDNEWDFNKAAQIFTQLKIEGKIPDVAFVK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcgaaaatggtaccccaacctggctgtggtcgcacgtgtccgatttgaccaa
gatcaggagggagttgtcgtccagagagatgtcacgcgcaaaggcaagctaccaggagag
catgacaacagagtcgcgggccctcagttccggggggggcgtatgagtcggggccccttt
aggggcccaatctactacgacggtccggccaggcagcagaggcctcgagggggccaaatg
ggtgggttcaggggccctggaccgggacctcgggtccggttcgaagataactatgtagat
gtaactatgaacagcgggagcccacaggatggcagctctcaccgcagattcaacccgtac
agatggccgaatcggagaggcgatggacaatttgaccgagacagaagaggagctgggggc
tacagaggagaaggtggaggaggaagagaaggaggcggaggaggaaaagacaagagcagt
tggtgcaagatgattattccctatgggaggaaatatgacaagaaatggctgctgacggct
ttacagaacctgtgctctgtacccttcacacctgttcagtaccagattgaaggccataaa
gcccagttctacctcgaggatgcctgcacagccaacgcactgtgcagagtctctcgccaa
atcacagacactgagggctacaaggtgatagtgctgatgaacccctgtcctcctcccgcc
atcctcaacacccaactgaagcctgaagacatggagcacttaaagcaatgcatggccaag
cgttttgatgggtcccagcgagcactggacctgaacaacatccgtactgacccagacttg
gtgtctcagaacatcagggctatcttgagcagaaagacctttatggatgctgtggtcaag
atcattgaggaaaacatccctgagctggtgtgtctgaacttgagcaataacaagctgtat
aaactggaagatgtggcagatctgataagcaaggccccacacctgaagatcctcaacctc
tcccacaatgagttgaagtcagagaaggagctggataggttgaagggtttgaagctggtt
gagctgtggttggaccgtaacccactgtgtgaccagttcaaggaccagctcacctacatc
agtgctatcagggagaggtttccccggctactcaaactggatggtcatgacctccccccg
ccgatagtgtttgaagtggtatcacccaccactacccccccctgcaagggtagctacttc
ggttcagaagaaatcaaggtcctcatcatgcatttcctgcaacagtactacagtgtatat
gactctgggaacagacagcctcttctagatgcctaccatgatggtgcctccttctcactc
agcttgccctccagtcaaaacccaaacaggtgtagtttgagagagtaccataaagacagc
cgtaacataaagcgactcaaagatccatcaacacggttccgcctactgaagcacacacgg
ctaaacgtggtggcgttgctcaacgagctgcctaaaactcagcatgactctgcctccttc
aatgtagacgtcaacacttacacgaccacgttactgtcctttacggtcagcggcatgttc
aaagaagttgatggtaaatctcaagacgtggttagggccttctctcgggtcttcattgca
gttcctgcaggaatttctggtctatgcatagtgaatgacgagctatttgtgcgcatcgct
acaacggaggagatccagcatgcgttcgctgctaccgcccccactccctccagcagccca
gtgcccaccctcaccgccccccagcaggagatgctctccgccttctccctcaagtctggc
atgaaccttgagtggtcgcagaagtgtcttcaggacaatgagtgggatttcaacaaagct
gcacagatcttcacacaattaaaaattgaaggcaagattccagatgtcgcttttgtaaag
tga
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