Oncorhynchus nerka (sockeye salmon): 115130966
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Entry
115130966 CDS
T07952
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
115130966
NCBI-ProteinID:
XP_029518433
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Position
LG1:23077974..23081122
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AA seq
712 aa
AA seq
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MPHLSHMGMGSKEQHPQQQWPGKDILHMQYPHYRKEIPQMPMHMGKEYPRKGVVVNSGQD
KGQTIPSGAVGGLPGGLPGEQGPAGPAGPEGPSGPPGPPGVGQPGGEGKPGSAGPPGFPG
VGKPGLPGIPGKPGSMGDPGVPGELGPSGGDGHMGQPGPQGPPGPPGLPGIGKPGVGGLP
GQPGPKGEPGHKGLPGLPGLPGPKGDKGIGQPGQPGHKGPAGPPGPPGQGGMPGVGKPGM
NGISGPPGGPGKPGPSGEQGLAGPAGEGGETGPPGLPGQGKPGQNGLPGQPGMPGGKGHP
GPPGLPGKPGLPGFGKPGFPGPKGDKGMGGMPGGSGPKGDKGHGGLPGVIGPPGPIGPAG
LLGPMGPPGGLGQPGAKGEAGEGGQKGLPGGQGEPGPPGLHGQNGFPGEGGEPGPRGPAG
PVGPQGEGGHKGLPGAPGIPGLSGPKGEGGLPGEKGPQGPKGIPGLGGAGGPIGPPGAPG
SKGDSGLPGLPGVEGNGNPGVPGPLGPPGKEGPGGPPGNPGQPGLPGPPGPPGPPTLSPN
MGAVLTEMGIPPGLDGVKTTGYGKKGKYGGNSGEVMGANGLEMPAFTALVTTPFPPVGTP
VVFDKILYNGRQNYNPQTGVFTCDMPGIYYFAYHISCKGANVWVALMRNDEPVMYTYDEY
KKGFLDQASGSAVLPLQPGDTVYLQLPSDQAAGLYAGQYVHSSFSGYLLYPM
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgccacacctgtcccacatgggcatgggcagcaaagagcagcaccctcagcagcagtgg
ccaggaaaggacattctccacatgcagtacccccattacagaaaagagatcccccagatg
cccatgcacatgggcaaggagtacccccgcaaaggtgtggtagtcaacagtggacaggac
aaaggtcagaccatccccagtggggctgtgggaggtctccctggaggcctgccaggagag
cagggcccagctgggcctgcaggacctgagggaccctctgggccaccaggtcctcctggg
gtaggacagccaggaggtgaaggaaaaccaggctctgctggtcccccaggattccctggt
gtaggcaaaccaggactcccgggaattccaggcaagccagggagcatgggagacccaggt
gtacctggagagctgggccccagtggtggagacggtcatatggggcagccagggcctcag
ggcccccctggtcctccaggtctcccggggataggaaaaccaggggttggggggttacca
ggacaaccaggacccaagggggagccaggacataagggcctgccgggactaccaggatta
ccaggacccaagggtgacaagggaattggacagccaggacagccaggccacaaagggcca
gcaggaccccctggacctccaggccagggagggatgcccggtgtgggcaagcctggaatg
aatggcatatcggggccaccaggaggaccagggaaaccaggcccttctggagagcagggg
ctggctggaccagcaggagagggtggcgagaccggtccaccagggttgccaggccaggga
aaaccaggccagaatggtctgcctggacaaccaggcatgcctggtgggaaagggcaccca
ggccctccaggtttgccagggaagcctggattgcccggatttggaaaaccaggattccca
ggacccaagggagataaagggatgggtgggatgcccggaggctcaggaccaaagggagac
aaaggccatggaggacttccaggtgtgattggaccacctgggccaatcggaccagctggt
ctccttggccctatgggaccccctggaggtcttggccaaccaggggcaaaaggagaggct
ggagagggagggcaaaaggggctgccaggtggccagggtgagcctggtcctcctggactt
catggtcagaatggcttccctggagagggaggagagccagggccaaggggtcccgctggg
cctgtaggaccccaaggggaaggcggacacaaagggttaccaggcgcccctggcattcca
ggcctatctgggccaaagggagagggaggacttccaggagagaagggtccccaaggccct
aagggcattccaggtctgggaggtgcaggtgggccgatcggacctcctggtgcccctggg
tctaaaggtgacagcggattacctggtcttcccggcgttgagggtaacggaaacccaggt
gtccctggtcctcttggacctccaggtaaagaaggtcctggaggaccaccaggaaatcca
ggccagccaggtctacctggtcccccaggcccacccggaccccccaccctctcccctaac
atgggagcagtcctcactgagatgggaattcctcctgggctggatggagtcaagaccacc
ggctatggcaagaaggggaaatatggaggaaacagtggagaggtaatgggcgccaacggc
ctggagatgcctgcgttcacggctctggtgaccacacccttcccaccagtgggcacgcct
gtggtgttcgacaagatcctgtacaacggccgtcagaactacaacccccagacaggcgtg
tttacctgcgacatgcccgggatctactactttgcctaccacatcagctgcaaaggggcc
aacgtgtgggtggcgctgatgaggaacgatgagcctgtgatgtacacatatgatgagtat
aagaagggattcctggatcaggcgtcggggagcgcagtgttaccactacaacccggggac
accgtgtacctccagctaccctcggaccaggccgcaggactatacgctggccaatacgtc
cactcatccttctctgggtacttgttgtaccctatgtag
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