Oncorhynchus nerka (sockeye salmon): 115131144
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Entry
115131144 CDS
T07952
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115131144
00535 Proteoglycans [BR:
one00535
]
115131144
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115131144
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115131144
Proteoglycans [BR:
one00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115131144
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115131144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
115131144
NCBI-ProteinID:
XP_029518629
LinkDB
All DBs
Position
LG1:complement(2474239..2654046)
Genome browser
AA seq
1604 aa
AA seq
DB search
MWDSQEGTVLPTDLIGLAENVNVLAGKENVMLGIVKVDLAESVLDEHNRTAEWNATVFPI
DSQPVPSVNVSLETTPSNRSSKRVIDSSSSWNANNFNSTEYSDEYTVSGDFLTPFDSNHS
LLATSETPAPESPRCWPIDFHLPFCKSMGGDSFVLPNYFNHSSVKEVRAVLGSWAWLLRS
RCHHSLEWFFCLLLLPRCPRGLPPPLPCRSFCEVLQDSCWTVLDEGSLPMECHSLPDEDD
GYQCLSVSNQKDEIGVSLLQLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPS
PFYRDFSLLFNLKPQSTKGGVIFSVTDASQKIMYVSVKLSPVKANKQNVIFYYTEPDSQV
SYVAATFPVHNLADQWTRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMALEAGAGVFV
GQAGGADPDKFLGVIGELRVVGNPRAAERQCEEEGDDSDVASGDGGSGDVEGTLDGKKKG
SEVQKYVWVEDDRPTVTTTPPSSRPIQQPPVTRQQPEVSPKKETGPGGSRGEKGDRGEKG
DRGPFGPKGDSGSESGTRGGARGEKGVPGEKGMKGKAGFGYPGSKGDPGPSGPPGPPGSP
GPAAEVVSRGDSSVIQTVAGPRGPAGPEGPAGADGEPGDPGEDGSQGLVGPPGFPGTPGD
SGLKGEKGDRGEGQPGPSGPPGPPGLPAPSSHDRPTFVDMEGSGFPDLEALRGLPGLPGP
PGLPGAPGPAVVGTGLSSSFGPQGPPGQDGAPGQPGLPGPPGTDGRPAVAGARGEKGDPG
ELGLPGAVGAKGAQGLTGISGQPGLGGLAGLPGPMGPVGQPGPPGPPGPSYHAGFDDMEG
SGVGVANGVPGTRGLDGRQGTTGIPGLPGKPGFPGAPGEMGNEGLQGRDGQPGLDGFPGP
NGQKGDRGERGETGRDGNGQPGPPGPPGPPGQIIYQTSGSDDGVVGRAGPQGETGLPGQA
GFPGPIGSKGDKGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLRELSGEKGDRGPAGPVGP
PGQYGPSGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFGYPGVPGLPGPPGPPGPAVP
VDRFNGYDASRNYPATKGEKGDRGAQGLPGTPGVASNLDIFTFKNDLKGERGDSGVKGEK
GEPSGGYYDPRFRGQQGPPGPPGNPGLMGPKGDSIMGLPGPQGPPGSPGIGYDGRPGIPG
PPGPPGPPGSPSLPGAYRPNHSINIPGPPGPAGPPGTPGHTSGVTVLRSYDTMIATARRQ
SEGTLIYIVDKTDLYIRVRNGFKQVLLGDYSPFYRDLDNEVAAVQPPPVVNYPQSQDHSA
NNGAEHFSQGGTATHPIKPPPHKPVEIPRPARPDNRNPDPRYPPQYDPRYPPQTDARYPP
QTDGRYSHVQPENRYPNQPESRFPVTPQRRPVPLPVPQPGGHLHTSGPGLHLIALNMPQV
GNMRGIRGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPIINLKDQVLF
NSWESMFSKTGVRMKENAPIYSFDGRDILRDSAWPEKMVWHGSSNEGHRQTDNYCETWRA
GDREVTGLASSLQTGQLLQQLPSSCSSSYIVLCIENSSLSHSKK
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatagccaggagggaacagttttacccacagacctcatcggtttagcagagaat
gtcaatgtgcttgcagggaaagagaatgtgatgctgggtattgtcaaggtggacctagca
gaaagtgttttggatgagcacaacagaacagctgagtggaatgctacggttttccccata
gacagtcagcccgtcccaagtgttaatgtctctcttgagacaactcccagtaacagaagt
agcaaaagagtaattgacagtagctctagttggaacgccaataattttaactcgacagag
tattctgatgaatacactgtctcgggtgattttctaaccccttttgacagcaaccactct
ctcttagctactagtgagacgccagccccggaatccccacgttgctggccaatagatttc
catttgcctttctgcaaatccatgggtggcgacagctttgttttgcccaactatttcaat
cacagcagtgtgaaggaggtccgggctgttttgggctcttgggcgtggctcttgaggtcg
cgctgccaccatagcctggagtggtttttctgcctgctgctgttgcccaggtgcccccgg
ggcctgccaccgcctttgccttgccgcagcttctgcgaggtcctgcaggacagctgctgg
acagtcctcgatgagggcagcctccctatggagtgccactctttgcctgatgaggacgat
gggtatcagtgcttgtcagttagtaaccagaaagatgagatcggtgtctccctcctgcaa
ctgatcggggaccctcccccagacgagatcactaagatctatggtcccgacaacagcccc
ggctacgtcttcggtcccgacgccaacacgggccagttggcacgtgcccatcttcccagc
cccttctaccgggacttctccctcctcttcaacctgaagccccagtccaccaagggcgga
gtcatcttttcggtcacagacgcctcgcagaagatcatgtatgtgagcgtcaagctgtcg
ccggtcaaagcgaacaagcagaatgtcatcttctactacacggagcccgactcgcaggtg
tcgtacgtggcggccaccttccccgtgcacaacctggccgaccagtggacccgcttctcc
atctctgtgctggacgacaaggtcaccttctacatcaactgcgacgaccaaccccaggtg
gtacgcttcgagaggtccccggatgagatggcgctggaggccggagccggggtgttcgtg
ggccaagccggaggggccgatcccgataagttcctgggggtgattggggagctgagggtt
gttggaaacccccgggctgctgaaagacagtgtgaggaggaaggggacgactcggatgtg
gcttcaggagatggcggaagcggcgatgtggaagggacactggacgggaagaagaaaggc
tcggaggtacaaaaatatgtgtgggttgaggacgacagaccgaccgttacgactacacct
ccgtcgtcacgcccgattcagcagcccccagtgacccggcaacaaccagaggtgtctccc
aagaaagagactggcccaggtggatctagaggagagaagggtgacagaggagagaaagga
gacaggggtcctttcggtccaaagggagattctgggtctgagtcgggcacacgaggaggg
gcacgtggagagaagggagtgcctggagaaaagggaatgaagggaaaagcaggcttcgga
taccctgggtcgaagggcgaccccggcccctctggtccccccggaccaccaggctccccg
gggcccgcggctgaggtggtatcacgtggcgacagctccgtgattcagacggttgcgggt
cccagaggaccagctggccctgaggggcccgcaggagccgacggggagcctggtgatcct
ggtgaagatggttctcaaggccttgttggaccgccaggcttccctggaaccccaggagac
tctgggctcaaaggagagaagggtgaccgtggtgagggccagccgggccccagtggacct
cccggacccccaggactcccagcgccatccagtcacgaccggcccacctttgtggacatg
gaaggctctgggttccctgacttggaggctcttcggggactgcctggtttgcctggccct
cctggactccccggggccccaggtcctgccgttgttggtacagggctctctagctcgttt
ggcccccaaggtcccccaggacaagatggtgcccctggtcaaccggggttacccggccca
cctggtacagatggtcgcccagcagttgcaggggccaggggagagaagggtgacccaggt
gaactcggtcttccgggagcagtcggcgcaaagggcgcacagggattgactggtatctct
ggtcagccaggactgggtggattggctggccttcctggaccaatgggaccagtgggacaa
cccgggccaccaggaccccccggaccaagctatcacgctggctttgatgacatggaaggc
tctggtgtgggagtggccaatggggttcctggaacccgagggctagacgggcgacagggt
actactggcatccctggcctaccgggaaagcctggtttccctggtgctcctggcgagatg
ggaaatgaaggactacaaggaagagatggccaaccagggttggacggtttccctggacct
aatggacaaaagggggacagaggagaaagaggcgaaactggtcgcgatggaaatggacag
cctggaccaccaggcccacccggcccaccaggacaaataatctaccagacctccggcagc
gatgatggtgtcgttggaagagctgggccccagggtgaaactggtctacctggccaagct
ggattccctggtcctattggatcaaagggcgacaagggagacccaggacagcccggttat
ggagtcaagggcgagaagggcgagcctggcttaatcattgggcctgatgggagtcctttg
tacctgcgagaattgtcgggtgagaagggagacagaggacctgccggacctgtcgggcct
cctgggcagtatggaccttctgggataaagggtgaatttggaatgcctggaagacctggt
cgtcctggtgtaaacggatacaagggtgaaaaaggagagccatccacaggtgccggattt
ggctacccaggtgtcccaggccttcccggacccccaggaccacccggaccagctgtgcct
gtggaccgcttcaacggatatgacgcctcaaggaattatccagcgacaaagggggagaaa
ggtgatcgcggagctcaaggtctcccaggaacgccaggtgtggcctctaacttagacata
ttcacattcaagaatgacctgaaaggagagcgtggggattctggcgtgaagggggagaag
ggagagccaagtggtggctattatgacccccgttttagaggacaacaaggcccaccagga
ccccctggaaacccaggacttatgggtccaaagggagattcaatcatgggcctccctggt
ccccagggcccaccaggctccccagggatcggctacgatggtcgtccaggaatcccaggc
ccaccaggtcctcccgggcccccagggtccccctcactaccaggggcctatagacctaac
cactccatcaatattcctggcccccccggacctgctggaccacctggaactcctggtcac
acttcaggggtgacagttttgaggtcatacgacaccatgattgctactgcaagacgccag
tcggagggcaccctcatctacattgtcgacaaaacagatctctacattcgagtccgcaat
ggattcaaacaagtcctgctcggtgactacagtcccttctacagagatctggacaatgaa
gtagcggctgtccagcccccccctgtcgtcaactacccccagtcccaggatcactcggcc
aacaatggagctgaacacttctcccaaggcggtaccgccacccatcccatcaagcctcct
cctcacaagccggtggagatccccaggcctgccagacccgacaaccgcaaccccgacccc
agatatccccctcagtacgaccccagatacccccctcagactgacgctaggtacccccct
cagacagatggccgctacagccatgtgcagcctgagaacaggtatcccaaccagcccgaa
agccgattcccagtcaccccccagagaagacccgttccccttcctgttccccagcctggc
ggtcacttgcatacatcagggccaggactccacctgatcgccctgaacatgccccaagtg
ggcaacatgcggggcattcgtgggtcagacttcctgtgtttccagcaggctcgtgctgtg
ggcctgaagggcaccttcagggctttcttgtcctccaagctccaggacctctacagcatt
gttcgcaagtccgacagagacagcctccccatcataaacctgaaggaccaagtgctgttt
aatagctgggagtctatgttcagtaagactggggtcaggatgaaggaaaatgcaccaatc
tactcctttgatggcagagatatccttagggacagtgcatggcctgaaaaaatggtctgg
cacggctctagcaacgagggtcaccgccagactgacaactactgcgagacatggagggcc
ggagaccgcgaggtgacaggcctagcgtcctcactgcagaccggccagctcctacaacag
ttgcccagcagttgctctagctcctacatagtgctgtgtatcgagaacagctctctctca
cactccaaaaaataa
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integrated database retrieval system
