Oncorhynchus nerka (sockeye salmon): 115131159
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Entry
115131159 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 4A-like
KO
K26457
neuronal PAS domain-containing protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115131159
Transcription factors [BR:
one03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115131159
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_NPAS4
PAS_3
PAS_11
HLH
Motif
Other DBs
NCBI-GeneID:
115131159
NCBI-ProteinID:
XP_029518615
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Position
LG6:complement(37186915..37192982)
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AA seq
914 aa
AA seq
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MYRSTKGASKARRDQINAEIRNLKDLLPISDADKARLSYLHIMSLASMYTRKSVFFSQES
GSAGSLEESARFLSFHELSELVQELPGFLLLLTGEGKLLYLSDSVSEHLGHSMVDLVAQG
DSVYDIIDPTDHFIMRTNLAPPTSPDTDRLFRCRFNTSKSVRRLSAGNKLVLIRARCLSP
PSSSSTPSSYWTSNPVWMCFCSPLEAVPTRFGPGGDQVPALIPPAAENNFFLASFQSQHS
RDMRLQNAQDSVSVYLGLDVSALRSRSWYSLLHPQDLSHASAQHCSLLREGGEGRSEMVV
RVESADQSWVWLYMVLQLEAGDSPISSNNYILSEAEGWSVRQQLSTEQTQLTLVLSTSTS
RQDSLSLSSPDQVFTPSSSGLSAQSFDFSMTVSSVGSSDETGGATTEPMQVEGDPRSSIS
SIEEESFFQQQQMPAPVQSPSAASSPTPVTVATVADLDFLTQNILLPPSFQLEPPLPALP
LPLPPAPTSQEQQTKEFVCTPPYTPQLGGGSFLFGEPLFSFDPTGTTTPPPSTTTATATT
SIATSLSPSAHPPHPPQSSPAPPSSLCLTGPSTDLFFPADPCSGSLYEKLPPTPDSPGDG
DCTVMTLPEVRGPLYVDVPLGSLHYPLDGLLTPEASPGKQPCLSFFSLEREREKERAEIS
LLAQHISSLAEGFYLDPLLSKLSPPSMSPSSSPPSPSLSPSIDTAGVDSSHMLGEFYPVK
AWRGLDFPIFHDDESLFEESILEALLQDFSTPPPLSPNPPSPPNPVCWHSPSHFEGVSHF
CSVQSAHCNPTAGCEATLAGESGAMAEVEGLVEEPMEIEVASSPLSSCSSIPASPPLRLT
ASPTSAPSTPVDHSTPAVPCAQSLLESLAPLEPMFGEGCRSPPGLGQQPELYQLQCHQPP
QCFHKDGSGSVPPF
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgatcaacgaagggagcgtcaaaggctcggagggaccaaatcaacgcggagatt
cggaacctgaaggacttgcttcctatctccgatgcggacaaggcacgactctcataccta
catatcatgtcccttgccagcatgtacaccaggaaatcggttttcttctctcaagaatcg
ggatctgctggcagtctcgaggaaagcgcgaggttcctgtctttccacgagctgtcagag
ctggtgcaggagctacctgggtttctgctcctgttgaccggggaaggcaagctgctctac
ctgtcagacagcgtctccgagcacctcggccactccatggtggatttggttgcccagggt
gacagtgtgtatgatatcattgaccctactgaccacttcatcatgagaaccaacctggcc
cctcctacgtcacctgacacagatcgtctattccgttgtcgtttcaacacttccaagtcg
gtgcgcaggctgagtgccgggaacaagctggttctgatccgggcgcgctgcctgtcccct
ccctcctcctcttccacccctagctcctactggacatccaaccctgtttggatgtgcttc
tgttcccctctggaggcagtccccacccgctttggccctgggggggaccaagttcctgct
cttatccctcctgctgctgagaacaacttcttcctagcctcgttccagtctcaacacagc
agagacatgaggctccagaatgcacaggacagtgtcagtgtttacctaggtctcgatgtg
tcagccctgaggtctcgttcctggtacagcctcctccacccacaggacctgtcacacgcc
tctgctcagcactgcagcctgttgagagaaggaggagaaggtagatctgagatggtggta
cgggtggagtctgcagaccagtcctgggtctggctttacatggtactgcagctggaggca
ggagacagccccatcagcagcaacaactacatacttagtgaagcggaggggtggtcagtg
agacagcagctgagcacagagcagacccagctgaccctggtactgagtaccagtacctcc
cgccaggacagcttgagcctgtccagcccagaccaagtcttcacccccagcagcagtggc
ctctcagcccagtcctttgacttcagcatgactgtgtcgagtgtgggctcctccgatgag
acagggggtgccaccactgaacccatgcaagtggagggtgaccctcgctccagtatttcc
tctattgaggaggagagcttcttccagcagcagcagatgcctgcccctgtccaaagccca
tccgctgcctcctcccccaccccggttaccgttgccacggtagcagatctggacttcctc
actcagaacattctcttgcccccttccttccagcttgaacctccgctgcctgcccttccc
ctgcccctccccccagcgcccacctctcaggagcagcagaccaaagagtttgtgtgcacg
cccccctacacaccccaactgggcggtggcagcttcctgttcggcgaacccctctttagc
ttcgaccccactggcaccaccacaccccctccctccaccaccacagctacagccaccacc
tccattgccacctccctctccccctccgcccacccgccccacccaccacagtccagtcct
gctcccccctcctccctgtgcctcactggcccctccaccgacctgttcttccctgctgat
ccctgcagtggctctctctatgagaagctaccccccacccctgacagccctggggatggg
gactgcacagtgatgaccttgcctgaggttcggggacccctgtatgtagatgtcccttta
gggtcccttcactaccccctcgacggcctcctcaccccagaggcctcccccggtaaacag
ccctgtctctctttcttctccctggagagagagagggagaaggagagagcagagatctcc
ctcttagctcagcacatcagctccttagcagagggattctacctggatcctctcttatcc
aagctatcccctccttccatgtccccctcctcctcccctccctccccctccctctcccca
tccatagacaccgctggtgttgactctagccacatgctgggagagttttacccggttaaa
gcgtggagaggcctggacttccccatattccatgatgatgaatctctgtttgaagagagc
atcttagaagcccttctccaggacttctccacccctccgcccctctcccccaacccgccc
tctccccccaacccagtgtgctggcactcaccctcccactttgagggggtcagccacttc
tgtagcgtccaatcggcgcactgtaaccccacggccgggtgcgaggcgacgttggccggc
gagtccggggcgatggcagaagtggaggggctggtggaggagcctatggagattgaggtg
gcgtcatcacctctgtcctcctgttcctccatcccagcatcccctcccctgcgactcact
gcctcccccacctccgccccctccacgcctgtcgaccactctacacccgccgtgccttgc
gctcagtccctcctggagagcctggcgcccctggaacccatgtttggggagggttgccga
tcgccccccggcttgggtcaacaacctgagttgtatcaactccagtgtcaccagccgcca
cagtgcttccacaaagatgggagtggaagtgttcccccgttctaa
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