KEGG   Oncorhynchus nerka (sockeye salmon): 115131213
Entry
115131213         CDS       T07952                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03013  Nucleocytoplasmic transport
one03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115131213
  09122 Translation
   03013 Nucleocytoplasmic transport
    115131213
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115131213
   03041 Spliceosome [BR:one03041]
    115131213
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     115131213
Spliceosome [BR:one03041]
 Complex C
  Other components
   EJC/TREX
    115131213
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115131213
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_IFT122_1st RMC1_N Beta-prop_WDR35_TULP_N eIF2A WD40_RFWD3 Beta-prop_HPS5 Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_SPT8 PD40 Beta-prop_EIPR1 B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Peptidase_S9_N DPPIV_N Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_ELP1_1st Cytochrom_D1 Beta-prop_WDR11_1st WD_LRWD1 YNCE
Other DBs
NCBI-GeneID: 115131213
NCBI-ProteinID: XP_029518668
LinkDB
Position
LG6:complement(53945414..53948100)
AA seq 322 aa
MASRYYQEMQESFRNNNKSREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDVFVTASGDKTIRIWDVRTTKCTATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDVKSHRSRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWTVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtccagatattatcaagagatgcaagagagtttcagaaataacaacaaaagcagg
gaattccctgcgcatagcgctaaagttcattcagtagcatggagttgcgacggcaggagg
ttggcatctggatcttttgataaaacagcaagcgtatttgtcttggaaaaagaccgtttg
gtgaaagagaacaactacagaggccatggagacagtgttgatcagctgtgttggcatcct
accaacccagacgtgtttgtcactgcatcaggggacaagaccatacgcatctgggacgtc
agaacaacaaagtgcacggctactgtcaacactaaaggggaaaacatcaacatctgctgg
agtcccgacggccaaacgatagccgttgggaacaaggacgatgtggttaccttcatcgac
gtcaaatcacaccggtcacgggctgaggagcagtttaagttcgaagtcaacgagatctcg
tggaataatgacaacgacatgttctttctcaccaatggaaacgggtgcatcaacatcttg
agttaccccgagctgaagcccatccagtcgatcaacgcccatccctccaactgcatctgc
atcaagtttgaccccacggggaagtactttgccacaggaagtgcagatgccctggtcagt
ctgtggaccgttgaagaactggtctgtgttcgttgtttctccaggttggactggccagtg
agaacattgagtttcagccatgatgggaagatgctggcttcagcctccgaggaccacttc
atagacatagcagaggttgaaacaggagagaagctgtgggaggtccagtgtgaatctcct
acgttcacagtagcctggcatcctaagagaccgctgctggcctacgcatgtgatgacaag
gaagggaagtacgacaacaatagagaggcaggcactgtcaaactgtttggattacctaat
gattcctga

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