Oncorhynchus nerka (sockeye salmon): 115131296
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Entry
115131296 CDS
T07952
Symbol
vps28
Name
(RefSeq) vacuolar protein sorting-associated protein 28 homolog
KO
K12184
ESCRT-I complex subunit VPS28
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115131296 (vps28)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115131296 (vps28)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115131296 (vps28)
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-I complex
115131296 (vps28)
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
115131296 (vps28)
Exosomal proteins of other body fluids (saliva and urine)
115131296 (vps28)
Exosomal proteins of colorectal cancer cells
115131296 (vps28)
Exosomal proteins of bladder cancer cells
115131296 (vps28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS28
Motif
Other DBs
NCBI-GeneID:
115131296
NCBI-ProteinID:
XP_029518746
LinkDB
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Position
LG7:complement(2397517..2404928)
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AA seq
223 aa
AA seq
DB search
MFHGIPVTGGMGGAPANKPELYEEVKLYKNAREREKFDNMAELFAVVKTLQALEKAYIKD
CVTPNEYTAACSRLLVQYKAAFKQVQGSDVGSIDDFCRKYRLDCPLAMERIKEDRPITIK
DDKGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSNMPPDNEAKDK
VSLWLTTLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLHSS
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacggaatacctgtcacgggaggtatgggaggagctcctgccaataaacctgaa
ttgtatgaggaagtaaaattgtacaagaatgcaagagaacgagagaagtttgacaacatg
gcagagctgtttgctgtggtgaagacacttcaggccctggagaaagcttacatcaaagac
tgtgtgacccctaatgagtacacggctgcttgctccaggctgctggtgcaatacaaggct
gctttcaaacaggtccagggatctgacgtggggtctatcgatgacttctgcaggaagtac
agacttgactgtccgctagctatggagagaatcaaggaggatcgaccaatcaccatcaag
gatgacaagggcaacctgaatcgctgcattgcagatatcgtatcgctctttatcactgtg
atggacaagctacgtctggagatccgggccatggatgagatccaaccagacctgagagag
ctgatggagaccatgaacagaatgagcaacatgcccccagacaatgaggccaaggacaaa
gtcagcctctggttgaccactctcagcagcatgtcagcctctgatgagctggacgactcc
caggttcgccagatgctgtttgacctggagtcagcctacaatgccttcaaccgcttctta
cactcctcctaa
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