Oncorhynchus nerka (sockeye salmon): 115131317
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Entry
115131317 CDS
T07952
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115131317 (vps50)
Membrane trafficking [BR:
one04131
]
Protein recycling
Others
EARP complex
115131317 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
115131317
NCBI-ProteinID:
XP_029518790
LinkDB
All DBs
Position
LG7:complement(3193030..3418203)
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AA seq
1002 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESIADLSPVEDFRIPSKEEMREMREQPIDPQAEQEIINSIQEV
YYSNDSFDMVQHELEKLPPELNLQELEEYRDQLKRQQATVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSISKEDFTEASLGLLANQRRRHLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTRVQLAYTLLEKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITQDSYVPCLSDLCKALWEVMLSYHRTMQWHEEQDKEEPPPTTDE
AGAADTEEAVVDHSYVKKKLEHGLTRIWQEVQLKVKAYLLGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSELLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQSRSPSVSPSRQVLSSQDQVLSSKDQEVLSLFQHFSQEGNPFERHIDNKD
EETEDVLASNGYESDELEKCVYQDYDSDSDVPDELKQDYVDEQTGDVPLKSASRETLRSR
KKSDYSLNKGSNAPILTNTTLNVIRLVGKYIQMMNILKPIAFDVIHCVSQLFDYYLYAVY
TFFGRNDMPAPSLGVPGSQGGREAGPARPVAPFCWYESSGPGLISSRLRTTLNRIQESLI
QMDSLGEGSSIVHGGPGEDRKEKVPSPHLSQLVVLTASETLYGLAQRVVATESLVFLAEQ
FEFLQSHLDTMMPAAKKPFLQQFYSQTVSTASELRKPIYWVVAAKALDYEQMLLLMAGVK
WDIREIMSQHNVYVDVLLKEFEEFNKRLGDVSRHVRVPLPVSNVLWEHCIRLANRTLVEG
YGNVKKCSNEGRALMQLDFQQFLMKLEKLTDMRPIPDKDFVETYIKAYYLTENDMEQFIK
NHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaagtcacttatggcccggcagggcctgaaaagcccacaggagagcatt
gcagacctcagcccagtggaggacttcaggatcccaagcaaggaggagatgagggagatg
agggagcagcccatcgacccccaggcggagcaggagatcattaacagcatccaggaggtc
tactactccaacgactcctttgacatggtgcagcacgagctggagaaactcccacctgag
ctgaacttgcaggagctggaagagtacagagaccagctgaagagacaacaagcaacggtt
tccaaaaaagttgccgatcttatcctggaaaaacagccgtcctacgttaaggagttggag
agggtgacgtcattacaaaccaatctacagctggctgcagtgatttgcaccaatgctagg
aggcagctgagtatttcaaaggaggacttcaccgaggccagcctggggctcctagccaat
cagaggaggagacacctgctcacagggctgctgaagtcactgaggaccatcaagaccctg
caaaggactgatgttcgactcagtgagatgctggaggaggaggactatcctggtgccatc
cagttgtgtctggaatgtcagaaggctgccagcacattcaaacactacagctgcataagt
gagttgaattccaagctacaagacactctggagcaaatagaggagcagctggatgtggcc
ttgtctaaaacctgcaagcactttgatgtctcccactacaccagagttcagctggcgtac
accctcctggaaaagacccagactgccatggaccagctccacatgcacttcacccaggcc
atccacaacactgtgttccaggtggttctgggatacgtggagctctgtgccggcaacgcc
gacaccaagtttcagaagatgcagtacaaggacctctgcacgcacatcactcaagacagc
tacgtcccctgcctgagcgacctgtgcaaggcattgtgggaggtgatgctcagctaccac
cggaccatgcagtggcatgaggagcaagacaaggaggagcccccacccaccacagatgaa
gcgggtgctgcagacactgaggaggcggttgttgaccacagctatgtaaagaagaaactg
gagcatggactcactcgaatctggcaggaagtccagctaaaagtgaaagcctatctgctt
ggtacagacatgtctaacttcaaatatgacgacttcatcgtggtcttggatgttatcagc
aggctaatgcaagtgggggaggagttctgcggcagtaagtcagagttgctgcaggaatcc
atcaaacgtcagagcgtaaactacttcaagaactaccacaggacacgcctggaggagttg
cggatgtttctggaaaatgagacgtgggaactgtgtcctgtcaagtccaacttcaacatc
gctcagctccatgagtttaagttcatgggtcagagccggtccccttcagtgtctcccagt
agacaggtgttgtccagtcaggaccaggtgttgtccagcaaggaccaggaagtcctgtct
ctgtttcagcacttcagtcaggaggggaacccctttgagaggcacatcgacaacaaagat
gaggagactgaggatgtactggcctccaacgggtatgagtccgatgagctggagaagtgt
gtgtaccaggactatgacagcgacagtgacgtccctgatgaactcaagcaggactacgtg
gacgagcagaccggagacgtccctctcaagagtgcgtcaagggagaccctgcgcagcagg
aagaagtccgactacagcctaaacaaaggctccaacgctcccatcctgaccaacacaacc
ctcaacgtgatccgactggtcgggaagtacatacagatgatgaacattctgaaaccaata
gcctttgacgtcatccactgtgtttcccagctgtttgattactacctgtatgctgtctac
accttcttcggccgcaatgatatgcctgcccctagcctgggtgtgcccggcagccagggg
ggcagggaggctggtccggccaggcctgttgcccctttctgctggtatgaatcatcaggt
ccgggtttgatcagcagccgactgagaacaacactgaacagaatccaggagagcctcatc
caaatggattctctgggggaaggcagctccatcgtgcacggtggtccaggggaggacaga
aaggagaaggtgcccagcccccacctcagccagcttgtggtcctgacagccagcgagacc
ctttacggcctggcccagagggtggtcgccacagagtcactggtgtttctggccgagcag
tttgagttccttcagtctcacctagacaccatgatgcctgcagccaagaagccgttcctc
cagcagttctactcacagactgtctccacggccagtgagctacgtaaacccatatactgg
gtggtggcggccaaggctttagactacgaacagatgctgctgctgatggctggagttaag
tgggacattagggagataatgtcgcagcacaacgtgtacgttgacgtcctgttaaaggag
tttgaagagtttaacaagaggctgggtgatgtgtccagacacgtccgggtccctctgcct
gtgtctaatgtcctgtgggaacactgcatccgtctggccaacaggacgctggtggaaggc
tatggtaacgtgaagaagtgcagtaacgaagggcgggccctgatgcagctggacttccag
cagttcctgatgaagcttgagaagctgacggacatgaggcccatccctgacaaggacttt
gtggagacctacatcaaagcctactacctgactgagaatgacatggagcagttcatcaag
aaccacagggagtactccatgaagcagctggccaacctggtgaacgtgtgtctgggctct
cacatcaacaagaaggcccggcagaaactcttggcggctatcgacgacatcgacagacca
aagagatag
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