Oncorhynchus nerka (sockeye salmon): 115131379
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Entry
115131379 CDS
T07952
Name
(RefSeq) obscurin-like protein 1 isoform X1
KO
K19574
obscurin-like protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115131379
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
3M complex
115131379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
V-set
Ig_5
Ig_4
Ig_6
C2-set_2
Izumo-Ig
VEGFR-1-like_Ig-like
Receptor_2B4
Ig_C17orf99
fn3
Motif
Other DBs
NCBI-GeneID:
115131379
NCBI-ProteinID:
XP_029518967
LinkDB
All DBs
Position
LG1:2710573..2798609
Genome browser
AA seq
3082 aa
AA seq
DB search
MDVFGGAPRFLAYPRPVVVQSGTDAVLKCQIGGDPRPAVIWERNNEQIHPEGRYRLFEDG
NVYNLIISSVTTEDSGQYTCKAKNSIGETYAAATLKVEGEAQELELREENKPRFLIKPLS
TRVGRGEDAVFSCKLWGNPRPEVVWEKDGRKLNEIFESTHFNVGYQDGGWFQLKIFKTRA
PDGGVYTCKARNEFGEGLAGAVLLVDAGPGHEEEGNRNGYTNGHWKGHQGKQRSGRQLTT
RLKDDPVTNQAKQVKMFAVTEGKHAKFRCFVTGKPKPEIIWRKDGRLIMSGRRYLLYEDR
EGYFTLKVLYCKQQDNGVYVCAASNTAGQTLSAVHLSVKEPPVRFKQPLIDLEVWERDLA
VLECEVPEDSVPITWYLEDRRLQPGAKYGMEEWGTKRRLTIRDIGVDDDGIYLCEMADGG
RSIAEVAVKGTIMRKLPRKVDVLEGENAAFCVEVEEEEMDIHWYKEGTELRETHQTILKS
FGKTHILVFVNTTPQDSGLVTFFVGRSKTSSQLRVKAARHSPPSCPVGVQINTERANAAL
LSWVPAQDTRKNPPSGYVLERQEVGTGSQEWLQCLTTDSATSVEILGDSVPCEADYRFRI
CSVNKYGRSNNVEFPRAVHLVPVTRIQAPLQDALVPEGQDACFSIELTASVIGSWFLNGT
QLMEDDRYSMRRSRTHQSLRIQGVRDTDNGAEITFIAYGIRDSAALYIQAPLVKFTPLSE
MDRNKFVELGNPIVLYCELSDPAVPVHWYKNGVEVHTVEGLHIQSEGTMRRIVIQSSEFS
HSGVYCCDAIDDVIRFNVEVEAPPVRFSALPEAERNKSIEAGCPIVLQCELSDPTAQVYW
YKDGTKLLPQSGIEIQSDGITRTLVVQSAEIFYSGSYSCKTKGDAIKFNVDVKVPPVRFS
VLPEAERNKVIEAGCPIVLKCELSDPTAQVYWYKDGIQLFSNHELDIQSEGNMRTLVVQS
AELTHSGTYSCTTVDDTMEFHVDIKAVPVTFSAIFDVEKTKSVEAGCPFQLQCEVTDPTA
QVYWCKDGEKLLPQTGMDIQSNGTMRRLIVQSAEVFHSGLYNCETSDDTLQFTVDIKAPP
VKFLPSPEVVKSQPFQATCPIELPCEISDPIAQVSRQKDKVELISDTGPFEMGGIRRNLV
VEPAHPSNSGAYYCATAEDVAPLIVQNQAPPVRITTPCEAERNKSVPAGGPIVLRCEISD
PNAHVSWYKDGTLLHEENGLEMQSKGSIRTLDVESARLSDSGSYSCKTTDDAMQFHVDVK
APPPKFTAISEADKKKYIKSGYPIVLQCELSDPTIKVYWYKDGTKLLTQSGVDIQSDGTM
RTLVIQSAELSHSGVYRCETMEDGLQFTVEVKAPPVRFSALPEAERNKLIEDGCPIVLQC
ELSDPTAQVYWYKDGTKLLSQSGMEIQSDGIKRTLLIQSAEISHAGTYECSTAGDTITFK
VEIKAPSQKIMPLSPMERNKSVEIGTPIVLQCELADPLAQVCWSKDEMKLFPKTGLDIQS
EANVKRLVIHSAELSDSGLYCCSLADDAMTFKVDVQALPVRFSALPEVVRNKFIEAGCPI
VLQCELSDPTAQVFWYKDGTKLLPENGVDIQSEGALRAVILQSAELSHSGVYSCEALDDC
IAFKVDVAAPIAPPVRFSAAPEVERNKSIEAGCPIVLQCELSDPSGQICWYKDGIKLLPQ
YGIHIQSEGTMRTLVIQSATFSSSGVYSCKTADDISEFYVDVKAPPVTFVDIPEEDLFKS
VVEQDRLVMSCEVSRVDAIVQWYKDGVETQSSDNIAVQADCTVRMLTIQSAQLSDSGTYT
CRAGDRALMFKVNIREPPVMIVYPKEDVHLDRHVPEEIILSCELSRLNGVVNWFKDGQKL
QESENIKLKIEGPYRRLKILCSGVEDSGEYVCDTADDSIFFHLSITEPPVQIISPSQSQM
ELCQQTSERMVLSCEISRPNAVVRWYRDGLEVEENDNLILEVDGVYRRLIIPETTVKDSA
EYVCDTADDNMTFFVNIADPPVRFVRPRKMASRVELFVGDSLVLDCEVSRSNATVSWKKN
GEEMEESSNVTVIEDGVMRQLTIHSMTLEDAGQYVCDAKDDVMDFQVKIKETPVKILSKN
DVNTQKQFFASDDIVLGCELSRANCMVVWYKDNKKIDDNERYCSEEQGVFRSLVVLNAEI
DDSGEYTCDAGDDKMVFSITVKEPPVTIIGNSGNPEHHSLVAGDKLILECEISCPNATVQ
WLWNGKLLSSDARTHIDSDGATRKLVLSGLQPSDSGEYILDAINDKMVTIVEVQEPPVQF
VNKQARTTISGYENESVTLCAMVNREQAYVRWLKDGELLNGDNIHISSVGKMHTLTINPL
KLSDSGGFVCNINTDEMYFIVQVKEMKVKFSRPLQNIVALKDSTLTLRCEVNKPKGDVQW
LKDGQEIKPSRQHTIRAQGRERSITIHQLMLDNAGEYACESTDDKTFATVGVEMPPPTVE
IIAELHNITVLEGEDATFKCMVSPEDTQLVWSLNGRPIAPDERFVISSNGLCHMLCIYNC
QVSDCATVTAEAQGLVSEANLQVQEQQVLFTKNMVPVVAEQFGEATLEVEVGLDSGEVQW
MRQGVVIHPGPKFTLKQKCRRRSLTIHKLALSDRGTYSCETLHDRTQAQLIVEPRKITIR
RGLTDIQTIQRETASFEVELSHSNVEATWLKDGNQLKPNNHWRMSAKGCVHSLTISNLTL
DDTGTFVLSAENVKSSARLIVKEPPVTVIKKLEDLRFPEAAMASMDCELSRPHVEVKWMK
NGIEVKPRKDLRIYAMGRKHYFQILKCEVSDSGTYSCDAGDSSTSCNIEVYERELLVLQG
LEDLDIQEEQNAVFVVEISLEDVPGEWFKNGMRITPTSTIKIRQEGTKHFLLMCNVRGED
SGEIKFVAKHVECTAYLEVEELPLNITNPLQDKVALERSRAIMDCSVSNPRCSIRWYKGS
NVILPSERFEICSEGCYRKLVIQQVALDDEGTYSVQVGEHTCSAKLTVEAQSLLMVRELK
SVEVVAPDEACFECEVSVPVLKAPVWSLKGEALQQGPKVSLEKMGMVHRLTLRQTSVDMN
GLVEFTSGKAKSSAELHVKSDP
NT seq
9249 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtttggtggtgccccacgtttcctggcctaccctcgccccgtagtagtgcag
agtggcactgatgctgtcctgaagtgtcagatcggcggggaccccaggccagcggtcatc
tgggagcgaaacaacgaacagatccacccagagggtcgctaccgtctcttcgaggatgga
aatgtctacaatctcataatttcatcggtgaccacagaggatagcggccagtacacatgc
aaggccaagaacagcatcggggaaacatatgccgcggcgaccctgaaggtggagggtgag
gcccaagagttggagctccgggaggagaacaagcctcgtttcctgatcaagcccctctcc
acccgggtgggccgcggcgaagacgccgtcttctcctgtaagctgtggggaaacccgcgg
ccagaggtggtctgggaaaaggacgggagaaaactcaatgagatatttgagagtacacat
ttcaatgtgggctaccaggacgggggatggttccagcttaaaatcttcaagactcgtgca
cccgacggtggagtgtacacatgcaaggccagaaatgagtttggagaggggctggctgga
gccgtgttgctcgtcgatgcagggccgggtcacgaggaagagggaaaccgtaacggttac
acaaatggccactggaaaggccatcaaggcaaacagaggagtggtaggcagctgaccaca
cggctcaaagacgacccagtgaccaaccaagccaagcaagtgaaaatgtttgccgtgaca
gagggcaagcatgccaaattccgctgctttgtgactgggaagcccaaaccagaaataata
tggaggaaagatggcaggctgatcatgtccggaagacggtacctgttatatgaagacagg
gagggctacttcacacttaaagtgctgtattgtaagcaacaggacaatggggtttatgtt
tgtgctgcatccaacactgcaggacaaaccctcagtgctgtacatctctctgtgaaagag
ccgcctgtgcggtttaagcagcccctcattgatctggaggtgtgggaacgggacctggct
gttctggagtgtgaggttcctgaggactctgttcccatcacatggtatttggaggacagg
cggctacagccaggggccaaatatgggatggaagagtggggaacaaaacgacgactcact
attcgtgacatcggagtcgacgacgatgggatttatctttgcgagatggcggatgggggg
aggagtattgctgaggtggcagttaaaggcacaatcatgcgtaagcttccacgtaaggtg
gatgttttggagggggaaaatgctgccttctgtgttgaagtggaggaggaggaaatggac
atacactggtacaaagaggggacggagctgcgtgagactcatcagaccatcctgaagtcc
tttggaaaaactcacattctggtttttgtcaacacaacgccccaggattctggccttgtg
accttctttgtgggaagatccaaaacctcctctcagctgagggtaaaagcggccaggcat
agcccacccagctgtccagtgggtgtgcaaatcaacacagagcgtgccaacgctgccctc
ctctcctgggttccggcacaggacacccggaagaaccccccatcgggttacgtgttggag
aggcaagaggtgggcaccggctctcaggagtggctgcaatgcttgaccaccgactcggcc
acctcagtggagattcttggtgacagcgtaccctgcgaggcagattatcgctttcgcata
tgcagtgtcaacaagtatggcaggagcaacaatgtggagtttccaagggcagttcacctg
gtccctgtgaccagaatacaagccccactgcaggatgccttggtgccagaaggccaggat
gcctgcttctcaattgagctcactgcctcagttattggctcatggttcttgaatggcact
cagcttatggaggatgaccgttactccatgcggcggtctcgaacgcaccaatccctacgc
atacaaggtgtacgagacaccgacaacggggctgagatcacattcattgcctatggaata
cgagattcagcagcactctatattcaagctcctctagtgaagttcacaccactgtcagag
atggatcgtaataaatttgttgaacttggcaaccccattgtactctactgcgagttgtca
gaccccgcagttccagtacactggtacaagaatggggtggaggtacacacagtcgagggt
cttcatattcagtcagaaggcacaatgaggagaattgtcatccaatcgtcagagttctcc
cattccggagtgtattgctgtgatgccattgatgatgtcataaggttcaacgtggaagtt
gaggctccacctgtgaggttttcagcacttccagaagctgagaggaacaagtccattgaa
gcaggctgccccattgtactacaatgtgagctctcagatccaactgcccaggtctactgg
tacaaggatggaacaaagctcctacctcaaagtggaatagaaatccagtcagatggcatc
acaaggacactagttgtccagtcagcagagatattctactctgggtcgtacagctgcaag
acaaagggtgatgccatcaagttcaatgtggacgtcaaagttccgcctgtgaggttctca
gtacttccagaagctgagaggaacaaggtcattgaagcaggctgccccattgtactgaaa
tgtgagctctcagatccaactgcccaggtctactggtacaaggatggaatacagctcttt
tcaaaccatgaactagacatccaatcagaaggcaacatgaggacgttggttgttcagtca
gcggaactgactcactctggcacttacagttgtaccacagtggatgataccatggagttc
catgtggatatcaaagctgtgccagtgaccttctcagctatctttgatgttgagaagacc
aagtcggttgaagcaggctgcccttttcaactgcaatgtgaggttacagatcccactgcc
caggtctactggtgcaaggatggggaaaagctcctcccacagactggaatggacatccaa
tctaatggcaccatgaggaggctcattgtccaatcagcagaggtctttcactcagggctg
tacaactgtgaaacttctgacgacactctccagtttactgtggatatcaaagctccacca
gtgaagttcttaccttcaccagaggttgtgaagagccagccgtttcaagcaacctgcccc
attgaactaccctgtgagatctcagaccccattgcccaggtgtcacggcagaaggacaaa
gtagagctcatctctgacactggacctttcgaaatggggggcatcaggaggaacctggtt
gtcgaaccggcacacccctccaactctggggcgtattattgtgctacagcggaagatgtt
gccccgttaattgtacagaaccaagcacctcctgtgagaatcacaacaccttgtgaagct
gagaggaacaagtccgttccagcaggtggtcccattgtcctgcgttgtgagatatcagac
ccaaatgcacacgtttcctggtacaaagacggaacgctgctacatgaagagaatggacta
gaaatgcaatcgaaaggttccataaggacattggatgtggaatctgcaaggctgtctgat
tcagggagctacagctgtaagacaacagatgatgcaatgcagtttcatgtggatgtgaaa
gctccacctccgaagtttacagcaatttctgaagctgacaagaaaaagtacatcaaatca
ggctaccctattgtactgcaatgtgagctctcagatcctaccatcaaggtgtactggtac
aaggatggaacaaagctcctaacccaaagtggagtagacatacaatcagatggaactatg
agaactctagttatccaatcagcagagctgtctcactctggagtgtaccgttgcgagaca
atggaggatggcctccaattcactgtggaagtaaaagctccacctgtgaggttctcagca
cttccagaagctgaaaggaacaaattaattgaagatggctgccccattgtactacaatgt
gagctctcagatccaactgcccaggtgtactggtacaaggatggaacaaagctcctatct
caaagtggaatggaaatccagtccgatggcatcaaaaggacactactcatccaatcagct
gaaatatcacatgctggaacatatgagtgctcaacagcaggtgataccatcacatttaaa
gtggagatcaaagctccatcacagaagatcatgccactttcaccaatggagaggaacaag
tctgtagaaattggcactcccattgtactgcagtgtgagctcgcagatcctctagcccag
gtctgctggtctaaagatgaaatgaaactatttcccaaaactggcctcgatatccaaagt
gaagccaatgtgaagagactagtaattcactctgcggagctctctgactctgggctctac
tgctgtagtcttgctgacgatgcaatgacattcaaggtggatgttcaagctcttcccgtg
aggttttcagcacttccagaagttgtgaggaacaagttcattgaagcaggctgccccatt
gttctacaatgtgagctctcagatccaactgcccaggtgttctggtacaaggatggaaca
aagctcctcccagagaatggagtcgacatccaatcagagggcgctttgagggctgtgatc
ctccaatcagcagagctcagtcactctggggtgtacagctgtgaggctttagatgactgc
atagcattcaaggtggatgttgcagcacctatagctccaccagtgaggttctcagctgcc
ccagaggttgagaggaacaagtccattgaagcaggctgtcctattgtactgcaatgtgag
ctctcagaccccagtggacagatctgctggtacaaggatggaataaagctcctcccacaa
tatggaatacacatccaatcagagggcaccatgaggaccctggttatccaatcagccaca
ttttcaagctctggggtgtacagttgtaaaacagcagatgatatcagcgaattctatgtg
gatgtgaaagcacctccggtgacgtttgttgatatccctgaggaagacctcttcaaaagt
gttgtggaacaagatcgtcttgttatgtcctgtgaggtttccagggttgacgccattgtc
cagtggtacaaagatggggttgaaacgcagtctagtgacaacattgcagtacaagcagat
tgcactgttaggatgctgaccatccagtcagctcagctgtcagactctgggacatacaca
tgtcgtgccggagacagagctttaatgttcaaggttaacatacgagagccaccagtgatg
attgtataccctaaagaagatgtccaccttgatcggcatgtaccggaggagatcattctc
agctgtgaactctcacgtctaaatggtgtcgtaaactggttcaaggatgggcaaaagttg
caagaaagcgaaaacattaaacttaagattgagggcccttacaggcgactgaagattctt
tgtagtggagtcgaagactctggcgaatatgtctgtgacacggctgatgattcaatattc
tttcatctcagcataacagagcctccagtacaaattatatctccaagtcagtcgcaaatg
gagctctgccagcaaacatctgagaggatggtgttgagctgtgagatctcaaggcccaat
gctgtggtgcgctggtatagggacgggcttgaggtggaggaaaatgacaacctcatctta
gaggtggatggggtctacaggagactcattatacctgagaccacagtcaaagattcagcc
gaatatgtgtgcgatacggctgatgacaacatgacgttctttgtcaacattgcagatcct
cctgtccgtttcgtacgcccaagaaagatggcaagtcgggtcgagttgtttgttggagat
tctttggttcttgactgtgaggtgtccagatcaaatgccactgtaagctggaagaagaat
ggggaggaaatggaagagagcagcaatgtcaccgttattgaggatggcgtcatgcggcaa
ttaaccatccactccatgacattggaggacgctgggcaatatgtctgtgacgccaaggat
gatgtgatggacttccaggtcaagatcaaagagacacctgtaaagatcctgagcaaaaac
gatgttaatactcaaaagcagttctttgcatcagatgacattgtcttagggtgtgagctt
tcaagagccaactgcatggtcgtctggtacaaagacaacaaaaaaatcgatgacaatgag
cgctactgtagtgaggagcagggtgttttccgttcactggtggttttaaatgctgagatc
gacgactctggagagtacacctgtgatgccggggatgataagatggtgttctctatcacc
gtgaaagaaccccctgtgaccatcattggcaactcgggtaacccagaacatcatagcctg
gtcgcaggcgacaaactcatcttggagtgtgagatatcttgtccgaatgccactgtccag
tggctttggaatggaaagttactgagttcagatgctcgcactcacatagatagtgacggt
gccaccaggaaacttgttttgtcaggacttcagccctcggactctggagagtacatattg
gatgccatcaatgacaaaatggtaaccatagttgaggtccaagagcccccagtccagttt
gtgaacaaacaagccagaaccaccatctctggctacgaaaatgaaagtgtgacactgtgt
gccatggtgaaccgggagcaagcctatgtgcgatggcttaaagatggtgaactattgaat
ggggataatattcacatctccagtgtgggtaaaatgcacaccctcaccatcaaccccctg
aaactatcagatagtggagggtttgtctgtaacatcaacacggatgaaatgtatttcatt
gtccaggtcaaagaaatgaaagtgaaattctccagacctctgcagaatatcgtagccctg
aaggacagtacccttaccctgaggtgtgaggtcaacaaacctaaaggagatgttcagtgg
ctcaaagatggccaggagattaagcccagccgtcaacatacgataagggcacagggtcgg
gagcgaagcatcactatccaccagctaatgctagacaatgctggggaatatgcctgtgaa
tccacagacgataagacttttgccactgtcggcgtagaaatgcctccacctactgtcgag
attatcgcagagctacacaatatcactgtactggagggggaagatgctacatttaagtgt
atggtttcgccagaggacacacagctagtgtggagcctgaacggccggcctatagctcca
gatgagaggtttgtcatttcaagtaatggactgtgccacatgttgtgcatttacaactgc
caggtctcagactgcgccacggtgactgccgaggcacaagggctggtgtctgaagcaaac
ctccaggttcaagaacaacaagtgttgttcaccaaaaacatggtgcccgttgtggctgag
caattcggggaagctaccctggaggtggaggtgggtctcgactctggagaggtgcaatgg
atgaggcagggtgtagtcatccacccggggccaaagttcaccctgaagcaaaagtgccgg
cgacggagcctcaccatccacaagctcgccctttctgaccggggcacctacagttgcgaa
actctccacgaccgcacgcaagcccaactcatcgtggaacccagaaaaattacaattcgg
agaggactcactgacatccaaaccattcaacgtgaaacagcatccttcgaggtggagctg
tctcacagcaatgtagaagccacttggctaaaagatgggaaccagctaaaacccaacaac
cactggcgcatgagtgccaaagggtgtgtccacagcctcaccatctccaacctcaccttg
gacgacacaggcacatttgtgttatctgcggaaaatgtgaaatcatctgcaaggctcatt
gttaaagagccaccagtgacagtcattaaaaaactggaggacttgcgctttccagaagca
gctatggcatcaatggattgtgagctatcaaggcctcatgttgaagtgaaatggatgaag
aatgggatcgaggtgaaaccacgcaaggatttgcgtatttatgctatgggaagaaaacac
tacttccaaatcctgaagtgtgaagtcagtgattctggcacatactcatgtgacgctgga
gactccagtacatcctgcaatatagaggtctacgaacgggagctgttggtcctgcaaggc
ctggaggacctggacatacaggaagaacagaatgctgtgtttgtagttgaaatctccctg
gaggatgtgcctggagagtggttcaaaaatggaatgagaattacaccaaccagcaccatc
aagatccgccaggaagggaccaagcattttcttctaatgtgcaacgtgagaggagaggac
tccggagagatcaagtttgtcgccaaacacgtggaatgcacagcctatctggaggtggag
gagcttccattgaacataacgaaccctctccaggacaaggtagctcttgagaggagtcgt
gcgatcatggactgctcagtatccaaccctcggtgcagtatccgctggtacaaaggcagc
aatgtcatcctgccctcagagcgctttgagatctgcagtgagggctgctatcgcaagctg
gtcattcaacaggtggcactggacgatgagggaacttacagtgtgcaggttggagagcac
acatgctctgcaaaactgactgtagaagcccagtctctcctgatggtgagggaactgaag
agcgtggaggtggttgccccggatgaggcctgcttcgagtgtgaggtctcggtccccgtc
ctcaaagcccccgtgtggagcctgaagggggaggccctgcagcaggggccaaaagtcagc
ctagagaagatgggcatggtccaccgcctcaccctccgacagacctctgttgacatgaac
ggcttggtggagttcacatcgggaaaagccaagagcagcgccgagctccacgtcaagagt
gatccttga
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integrated database retrieval system
