Oncorhynchus nerka (sockeye salmon): 115131585
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Entry
115131585 CDS
T07952
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
one00535
]
115131585
Proteoglycans [BR:
one00535
]
Extracellular matrix (ECM) proteoglycans
Others
115131585
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
DUF4959
DUF4992
Motif
Other DBs
NCBI-GeneID:
115131585
NCBI-ProteinID:
XP_029519261
LinkDB
All DBs
Position
LG7:16941386..17035912
Genome browser
AA seq
1883 aa
AA seq
DB search
MQAIGLKMWVWSPLLCLVLISLLPVQAQGQVATPRRLCFKVLSATQLHVSWKEPKGEFES
YRFIYSTQSDAEETELEMTKKEAKVIIDFDPRKLYTVKVTAVKGAQESKPLQGTFKKPDN
ENVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRMEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVRPPAQSLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSVMSSIVERLTRTVCDRVEQLDKVIKGDRGPEVTMTSPR
GLVTSEVTARSFRVSWTHAPGTVEKYRVVYYPASGGQPEEKVVQGTVDTVVLNYLLSLTE
YQVAVFAIYASSASEALRGSATTLALPTVNNLELFDITHNTMRARWRVAEGASGFMILYA
PLTEGDDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLTP
ARNLRFSNVDHSSARLTWEATSKKASGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLRSSEVSTESFRVTWEHSAQDVVLYRLT
WTPIRGGDTKEMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVARTT
TTTKATTTTTTTQATTTAVVRLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYVTARG
DRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLRV
SEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGTEYGV
RVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRHATLYRVVIESLLN
GYKQEARLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTPAPTRPP
TTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYSTTGALDIIGPDGTQ
VAIVQFSDDARTEFKLNSYDNKERLLEAINHISYKGGNTKTGLAIRHVKDTIFTVGGGIR
RGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSERHVFF
VDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGHVSGVSM
EPGTFNSFSCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILNK
DNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHMAISKTSAKA
VIDCKLVGEKAINAAGNITTDGLEVLGRLVRSRGKKDSSAPFQLQSFDIVCSTSWASRDK
CCELPGLRKEEDCSAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAVGPIGPV
GDAGSPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSSGRVGQTG
TRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDLQ
SQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGPGPQGEQ
GPPGRPGFPGSNGENGQAGARGLSGEKGDKGSPGAGVQGPRGPVGPPGPTGQGRTGSQGP
SGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLPLVQLPP
NTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPGLTQGDEVLRSPGIHRSY
RSLADKNDKKEEEGPGERKMVVP
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagatgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagactttgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagaatttgaaagc
tacagatttatttatagcacacagtcagatgcagaggagactgaactagagatgacaaaa
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacacagtcaaggtcact
gctgtgaaaggtgctcaggagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaacgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcactgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccattgcagatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggatggagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccctacaaaggagggaacacattgacgggtctt
gcattgacatacatcctggagaacagttataaacctgagtccggatccagggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcagacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgag
aaagagctgaaggccatcggctcacctccagaggagacgcatgtctacaacgtggccgac
ttcagcgtcatgagctctatcgtggagcgtctgaccaggaccgtctgtgaccgggtcgaa
cagctcgacaaggtcatcaaaggcgacagaggcccagaagtcaccatgacctctcccaga
ggcctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggacggtggagaagtaccgggtggtgtactaccctgccagcgggggccagcccgaggag
aaggtagtgcagggcacagtggacacagtggtgctcaactacctcctctccctgactgag
taccaggtggccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagc
gctaccacattggccctgcccacggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggcttcatgatcctctatgcc
ccgctgaccgagggagacgacgccgatgagaaggaggtgaaagtggctgagacggtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgacggtgtacgccatg
tacggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgaccccg
gcgcggaacctgcgcttctccaacgtcgaccacagctctgccagactcacctgggaggcg
acgtccaagaaggccagcggttaccgcatcatgtacgtcaagaccaatggagtgcagacc
aatgagatggacgttggccgtatcaccaccctgttgctaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgactgac
agcttcactactaagacggtcccagagcctctgaacctgaggagcagtgaagtctccaca
gaaagcttcagggtcacctgggaacactcagcccaagatgtggttctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgctagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccattactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagaaagcaacgctgtgaccctcacagagtcaacagtggcaagaacaacg
actaccacaaaagctactactaccacaactaccacacaagctaccaccacagcagttgtg
cgtctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtgtcc
tgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccaggggc
gatcgtgccgaggagacgaaaatggtcccaggtggtcagaacagcctcctgctgcagcca
ctgctgtctgacatggagtacaaggtgacggtcaccccggtctacgccgacggagacggc
cccggtgttagccgcatgggacgtaccttgccactgtctgctcctaggaacctgagagtg
tcggaggaatggtacaaccgcttccgtatcacctgggacacacccccatcccccactatg
ggctatagagtcgtctacaaacccatctctgctccgggacctgctttggagacctttgtg
ggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtactgagtacggcgtc
agggtcatcgcctcctacactaccggctccagcgagaccctcaccggcaaggccaggaca
ttgtaccttggagtgaccaatctgaacacctaccaggtgaggatgaccagcgtgtgtgcc
cagtggggtgcccaccgccacgccactctgtaccgtgtggtcatcgagtcgctgctcaat
ggatataagcaggaggcaagactgggaggaggaaccacccggcactgcttcaatgacctg
acagctaacacgcagtacaagatcagtgtgtacgcccaactccaggatacagagggacct
gcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagaccaccc
accacgaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaaggca
gacctggcatttctagtggacggctcctggagcatcggggatgacaacttcctgaaaatc
atccgcttcctgtacagcaccacaggagccctcgacatcattggaccagatggtactcag
gtggccattgtccagttcagtgacgatgccagaacagagttcaaacttaactcgtacgac
aataaggagaggctgctagaggccattaaccacatctcctataagggagggaacaccaag
acagggctagccatccggcatgtgaaagacaccatcttcacagtgggaggaggtatccgg
aggggcatccccaaagtactggtggtgttgactgacgggcgctctcaggatgatgtcaac
aaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcggat
gcggactacggggagctggtgagcatcgccagcaagcctagcgagagacacgttttcttt
gtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgtgag
gctgccactgccacttgtccttcggtggcgatgagtggcagtaccttgccaggtttcagg
atgatggagatgtttggtctggtggagggtctgtatggacatgtatcaggagtgtccatg
gagcctggcaccttcaacagcttctcctgcttccgcctgcacaacaactccctccttgcc
cagcccaccaagtttatccaccccgagggtttgccctctgattacaccatcactatgctg
ttccgcctgctgcctgaaacgcccaaggagccctttgcattgtgggagatcctcaacaag
gacaacgagcccctggtgggcgtcatcctggacaacggtggcaagaccctcaccttcttc
aaccatgactacaaaggacagtttcagactgtgaccttcgagggacctgagatcaagaag
ctcttctacggcagtttccacaagctgcacatggctattagcaagaccagtgccaaggct
gtcattgactgtaagctagtaggggagaaggccatcaacgcggcgggcaacatcaccacg
gatggcctggaggtgctgggacgattggtgcgctccagggggaagaaggacagctctgca
ccgttccaactgcagtcgtttgacatcgtctgcagcacgtcctgggccagccgagacaag
tgctgtgagcttcctggtttgaggaaggaggaggactgtagtgccatgccgagggcctgc
acctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacctggg
atcagaggagggagaggggaccgtggagaaccaggagctgtgggaccgataggtccagtt
ggggacgctggttctcctgggctgcaggggcctcctggaccccaggggcccagcggacgt
accatcatgggccctccgggtggtccaggagaaagaggtgagaagggtgcagctggcgct
ccaggaatacagggcattcctggatctcctgggtcatcaggtcgagtgggacaaacagga
acaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggactata
ggcactccaggagctcctgggtcaccagggtcaagtggacctccagggtcactgggaaac
cagggacctcctggtcccgccggaaacaaaggagagaagggagaaagaggtgacctgcaa
tcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcaactgatacagagtcac
atggctcgttacagctccatccttaaccacatccccagcgcacccgtctccgtccgcacc
gttccaggtcccccaggagagcctgggcggcagggcggcccaggaccacagggagagcag
gggcccccgggcagaccagggttccccgggtccaacggagaaaatggacaagcaggagcc
agaggtttgtcaggagagaagggtgacaagggaagcccaggcgcaggagtccagggtccc
agaggccctgtcgggcccccaggaccaacgggtcagggccggacaggtagccagggtcca
tctggtcggccggggaaccctggaacccctgggcggccgggtatccctggaccagtgggg
tcggctggacctcctggatactgtgaccagaactcctgtgtgggctacaacgtaggagag
ggtggcatcggtggtgacacatctgaccgccacaatcttcccttagtccaattgcccccc
aacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgagggg
ggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgcccgag
gacccaggcctcacccagggcgacgaggtgctgaggtcccctgggatccaccgctcctac
aggagcctggctgacaagaatgataagaaagaagaagaggggccgggggagaggaagatg
gttgtcccatga
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