Oncorhynchus nerka (sockeye salmon): 115131611
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Entry
115131611 CDS
T07952
Name
(RefSeq) antigen peptide transporter 2-like
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04145
Phagosome
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115131611
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115131611
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115131611
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115131611
Enzymes [BR:
one01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
115131611
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
115131611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_16
ABC_ATPase
Rad17
AAA_30
AAA_25
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
115131611
NCBI-ProteinID:
XP_029519315
LinkDB
All DBs
Position
LG7:complement(17610391..17617040)
Genome browser
AA seq
724 aa
AA seq
DB search
MMLRTCVFAMAVGLCIDITTFCATGFGASISKTGPISLDVFGNLVGLWVVAGIRLVILFG
VSLLTLGSIKTVLKRWLAVHCFLAPVYETGQLMLHGSSPESTHGSLGGPSLWLLCTAAAA
AAALFWEKTFPDSNEESNGKEKTQKARVLFTRVLYFYRPDTLLLVGAFIFLSLAVLCEMF
IPFYTGKVIDILASQYKWNDFLTAIILMGLYSLGSSFSAGCRGGLFMCAINSFTSRMKVE
LFGALVKQEISFFETIKTGDITSRLSTDTTKMARAVALNVNVLLRTLIKIVGMLSLMMSL
SWKLTLLMLMETPVTGLLQGVYDNYYLRLTKEVQDSMARANEAAGETVAGIRTVRSFNTE
RSEAGHYDHRLMDTHNLKTRRDTVRAVYVLLRRLTALVMQVAMLYYGRLFIQRGQMSTGN
LVSFILYQSNLGTNIRTLIYIFGDMLNSVGAAGKVFEYLDREPQVSTKGTLQPETLTGHV
HFHNLSFSYPTRQERKVLQGFSLELRPGQLTALVGPSGGGKSTCVSLLERFYQPQQGEIL
LDGQPLHSYQHHYLHRKVAMVGQEPVLFSGSIKDNIAYGLADCSLERVQEAARRANAHSF
ISQLEKGYDSDVGERGGQMSGGEKQRIAIARALIREPQVLILDEVTSALDTESEHMVQEA
LASCPSQTLLVIAHRLKTIERADQIILIDQGTVLEQGTHQELMDRKGGYYKLRERLFTED
DTSH
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttagaacgtgcgtgttcgctatggctgtaggtctatgcattgacataaccaca
ttttgcgccacgggttttggcgcatctatttccaaaactggaccaataagtttagacgtt
ttcggaaatctggtgggtctatgggttgtggcggggattcgattagttatactatttggt
gtatcgctactcacactaggatcgattaaaactgtattgaagcgctggttagcagtgcac
tgtttccttgccccggtctacgagaccgggcaactgatgctgcatggcagttcaccggag
agcacgcatggatcgttggggggtccaagtttgtggctattgtgtacggcggcagcagct
gcagcagccctgttttgggagaaaaccttccctgacagcaacgaagaaagtaacgggaaa
gagaagacacagaaggcacgagtgctgttcacgagagtcctctacttctacagaccagac
accctccttttggttggagcgtttatattcctgtcactggctgtcctctgtgaaatgttc
atcccattctatacaggaaaagtgattgacatcttggcttcccagtacaagtggaatgac
tttctcacagctatcatcctcatggggctctactctttgggaagctcattcagtgcaggc
tgtcgaggaggcctcttcatgtgtgccatcaacagcttcacctctcgaatgaaagtagag
ctgtttggggccctggtgaagcaggagatcagcttctttgagaccatcaagacaggtgac
atcacgtccaggctgtccacagacaccactaagatggcccgggcggtggccctgaatgtc
aacgtcctactgaggaccctcattaagattgtgggtatgctgtcgctcatgatgagcctg
tcctggaagctcactctgctcatgctgatggagacgcccgtcaccggcctgctgcaaggc
gtctatgacaactattacctgaggctcactaaggaggtgcaggactccatggccagggcg
aacgaggcagcgggggaaacagtagcaggaatccggaccgtgcgaagctttaacacagag
cggagtgaggctggtcattatgaccacaggttgatggacacccacaatctcaagaccagg
cgggacactgtcagggcagtgtacgtgctcctgagaagattaacagcgctggtaatgcag
gtggccatgctgtactatggcagactgtttatccagagaggtcagatgagcactgggaac
ctggtctctttcatcctctaccagtctaacctgggaaccaacatcaggactttgatttac
atctttggcgacatgctgaactcggtgggggcggctggtaaggtgtttgagtatctggac
agagagccccaggtcagcaccaaggggaccctccaaccagagaccttaactggacacgtc
cacttccacaacctctccttctcctaccccacccgccaggagcgcaaagtactgcagggc
ttctctctggagctgaggccgggtcagctgactgctttggtggggccgtcaggagggggg
aagagcacctgtgttagtctgctggagaggttctatcagcctcagcagggagagatccta
ttggatggacaaccactgcacagctaccagcaccactacctacacagaaaggtggccatg
gtgggccaggaacctgttctgttctctgggtccatcaaggacaacattgcctacggcctg
gcagattgctctttggagagggtgcaggaagctgctcgcagagccaacgcccacagcttc
atcagccaactggagaagggttatgactcagatgtaggagagcggggtggtcagatgtcc
ggtggtgagaagcagcgtattgccatcgccagagctctgatcagagagccacaggtcctc
atcctggacgaggtcaccagcgcactggacactgagagcgaacacatggtgcaggaggcc
ctggctagctgcccctcccagaccctgctggtgattgctcacaggctgaagaccatcgag
agggcagatcagatcattctgattgaccaaggaaccgtcctggagcagggcactcaccag
gagttgatggacaggaaggggggctactacaaactaagagagagactcttcacagaagac
gacacgtcacattga
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