Oncorhynchus nerka (sockeye salmon): 115131661
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Entry
115131661 CDS
T07952
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115131661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115131661
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115131661
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115131661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115131661
NCBI-ProteinID:
XP_029519395
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Position
LG7:complement(19007113..19026516)
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AA seq
940 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSSATYTTENSED
DKKRGRSTDSEVGQLCCTRSDFEVMPFIQFQSPIKNGNPSSSLSSSSSSSSSSSSSASSG
ASSSSLATIAGVGLPVTGGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNSVISSNA
PSNSNPSNNLLLPSPSASSPANSSTTLPPLTPNTQLHAPSRPSPSSSLGLGLGLGLGKGG
ITGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSVSSSS
PNSGTVGPMGGNTVSDRSTGLLGSAPCAIGVSGGILSLSGLGSGQLAVQGPPLVASSPIG
GLSPGSSLGAIGSIGGNSGSGVPSTAITRPPSGQKQNGSTSYSAVVADSTPDSALNSASQ
LQSSQPSSLTSTTNQPKDSGPSLLGPMILPTSSPSPSYSESKLPGSGMLNGPLSYTQTSE
SKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAPQQPSLSEVSI
PPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVP
PPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPK
TITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggcgacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgtccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
gattttgaagtaatgccttttatacaatttcagtcgcctatcaagaacggcaacccttct
tcgtcgttgtcctcctcctcctcttcatcctcttcctcttcatcctctgcctcctcggga
gcctcctcatcctcgctggcgaccattgccggggttggcctgcctgtcactgggggcaac
agcctcctgggcaacatgggaggtctcctctccaactctggcagctacagagacgctacc
caactgcagcagcattaccatacccagcaggccagaaactcagtcatctcctccaacgcc
ccctccaactccaacccttcgaacaacctcctcctccccagcccctccgcttcctcaccc
gccaactctagcacaaccctccccccactcacgcccaacacccagttgcatgctccgtca
aggccgtcaccgtcctccagcttggggcttgggttgggcttgggccttggtaaaggcggc
attacggggtcaccggccgtcagccagatgtccggccttggcttgtcggggatgccagca
tccctaaacaccatggccgggctcctggcgggctcaacttcggccccctacgccacggca
gcagcaggctccggaaccatcggaagccccctagcagggaaaagcgtcagcagtagcagc
cctaactccggcacagtgggaccgatgggcgggaacactgtcagcgatagatccacgggc
ctgttgggctctgcgccctgtgcaattggtgtcagcggtgggatcctcagcctaagcggc
cttggctcagggcagttggcggtccagggccctcccctggtggcctccagtccaatagga
ggcctgtcccctggaagcagcctgggagccataggaagcattggagggaactctggttca
ggcgtgccaagcacggcgatcacaaggccacccagtggacagaagcagaatggtagcact
agttacagtgctgtagtagcagacagcacacccgattccgccctcaatagtgccagccaa
ttacaaagcagccaaccctcgtctttgacctccaccaccaatcagcctaaagacagtggc
cccagcctcttagggcccatgattcttcccaccagctctccctcaccctcctacagcgag
agtaaacttccaggcagcggtatgctcaacgggccactctcctacacacagacctctgaa
agcaagccccaggagcctctgagcactctaaagtctatggcagaacgagcggcactgggc
tcaggaatggagggagagatgcttcctctgcacctcaccacagacattttccccagcact
acattgcccccggggcctccctcagccccccagcagccctcgctttcagaggtcagcatc
cccccatcgctgggcgtgtgcccactcgggcctgtgcccctgtccaaagaccagctgtac
cagcaggccatgcaggaatcggcatggacgcacatgccccacccctccgactcggagagg
atcaggcagtacctgatgaggaacccatgtcccaccctgcctttccaccaccaggtgcca
cccccacactccgactctgtagagttctaccagagactgtccacggagacactgttcttc
atcttctactacctagagggcaccaaggcccagtatctggcagccaaggccttgaagaag
cagtcgtggcggttccacactaagtacatgatgtggttccagaggcacgaggagcccaag
accatcacagatgagtttgagcaggggacgtacatttactttgactacgagaagtgggga
caacggaagaaggagggattcacgtttgagtacaggtaccttgaggaccgagacctccag
tga
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