Oncorhynchus nerka (sockeye salmon): 115131677
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Entry
115131677 CDS
T07952
Name
(RefSeq) splicing factor, proline- and glutamine-rich-like
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115131677
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115131677
03041 Spliceosome [BR:
one03041
]
115131677
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115131677
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115131677
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115131677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_7
Motif
Other DBs
NCBI-GeneID:
115131677
NCBI-ProteinID:
XP_029519445
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Position
LG7:complement(19561448..19584197)
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AA seq
679 aa
AA seq
DB search
MSRDRFNINIRGNNRGAGFQRRGAGPGGPMRGGMGNLNNFRQNQHPFQRGPHPGNFGKPP
NQIRPMTPQKPLPPTISQPGAQPIRPPPTPGPALTMKGPVQQQQAAAAAAPPVPVAAPPV
TVAAPPVTVAAPPAPTATTPATAAPAAAPPAVATAPPKAATAPPKAAAAPPKAAATPPTA
AAPTGQPKMQSPPPKPVPPKPAISSPPPNQMKKPALSSPPPNQMNRNQQRAGPGNANGNG
HKSAPFNKKPEPQTQNTQMEAEEAQHPKELRATLSSLRRPGEKTYTQRCRLFIGNLPNDI
SDDTFKKLFAKYGEPSEIFINKNKGFGFIRLESRALAEIAKAELDDVPMKGRPLRVRFAT
HSAALSVKNLSPFVSNELLEEAFSQFGVVERAVVIVDDRGRSTGKGIVEFASKPAARKAL
DRCNDGVFLLTTSPRPIVVEPLEQYDDEDGLPEKLAQKNHNYHKEREEPPRFARPGTFEF
EYSKRWKSLDDMEKQQRQQVEKNIREAREKLEGEMDDAFHVHQANMIRQDLLRREEELRR
MEEMHSAEMQKRKEMQLRQEEERRIREEEMLRQREIEEQMRRKREEAYRSGNFMDNRDMR
MTQGGSMGMADNQFGSPNQKFPMGHQGMGGPSTGGAMMPNEMRNERNFPQGGRGGLGPNN
QGFGRVREEFDGPAKKPRF
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgggacagatttaacattaacattagaggaaataaccgtggagctggatttcaa
cgccggggagctgggcctggtggtccgatgcgaggtggaatgggtaacctgaataatttc
agacaaaaccaacacccctttcaaagagggcctcatcccggtaactttggaaaaccaccc
aaccagatacgtccgatgacccctcagaagcctctgccacctactatttcccagccaggc
gctcaaccgattcggccaccacctactcctggccctgcgctaaccatgaagggccccgta
cagcaacagcaggccgcggccgcagcagcacctccggtgcccgtagcagcacctccggtg
accgtagcagcacctccggtgaccgtagcagcacctcctgcgcccacagcaacaactcca
gcgactgcagcaccggcggccgcacctccggctgttgcaacagcacctccgaaagccgca
acagcacctccgaaagccgcagcagcacccccgaaagccgcagctacacctccaacagca
gcagcgccgacaggtcaaccaaaaatgcagtccccacctccgaagcctgttcctccgaaa
cccgcaatctcatctcccccaccaaaccaaatgaagaaaccagcactttcatctccccca
ccaaaccaaatgaataggaaccagcaaagagcaggaccaggcaacgccaatggaaatggg
cataaatctgcaccctttaacaaaaaacctgaacctcaaactcagaatactcaaatggag
gccgaggaagcccagcaccccaaggagttgagagcgacgctgtcatcgctgcgcagacct
ggcgagaagacatacactcaacgatgccgccttttcattggcaaccttcccaatgatatc
tcagatgacacgttcaagaagctgtttgcgaagtatggcgagcccagtgagattttcatc
aacaaaaacaaaggctttggcttcatacgcctggaatcccgtgcattggctgagatagct
aaagctgaactggatgatgtgcccatgaaaggcagacctcttcgggtgcgcttcgcaact
cactctgctgcactgtctgtgaagaacttgtcaccctttgtttccaatgagctactggag
gaggccttctcccagtttggagtggtagagagagctgtggtaattgtagatgatcgcggg
cgctccactggcaagggcattgttgaatttgcctctaagcctgctgcacgaaaggccctg
gatcgttgcaacgatggcgtcttcttgctcaccacgtcacctcgtccaattgtcgttgag
cctcttgaacaatatgatgatgaggatggtctaccagagaaactggcacagaagaaccac
aactatcataaggagcgggaggaaccgcccaggtttgcccgtcctggcacatttgagttt
gaatattctaagcgctggaagtccctggatgacatggagaagcagcagcggcagcaggtg
gagaagaacatccgcgaagcccgtgagaaactggagggagagatggacgatgcgttccat
gtgcaccaggccaacatgatccgccaagatctgctgaggcgggaggaggaactacggcgc
atggaagagatgcacagtgcagagatgcagaagaggaaagagatgcagctcaggcaggag
gaggagcgtcgcatacgtgaggaagagatgcttcgccagagggagattgaggagcaaatg
cgccgcaagcgtgaggaggcatacaggagtggcaacttcatggacaatagggatatgaga
atgactcagggtggctccatgggcatggctgacaatcaatttggctcacccaaccagaag
ttccccatgggacaccaaggcatggggggacccagcactgggggagccatgatgcccaac
gaaatgcgaaatgagcgaaacttccctcagggaggccgggggggactgggtcctaacaac
caagggtttggcagggtccgtgaggagtttgatgggcctgccaagaagccccgcttttaa
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