Oncorhynchus nerka (sockeye salmon): 115131806
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Entry
115131806 CDS
T07952
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115131806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115131806
03036 Chromosome and associated proteins [BR:
one03036
]
115131806
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115131806
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115131806
mRNA degradation factors
5'-3' decay
Decapping complex
115131806
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115131806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
115131806
NCBI-ProteinID:
XP_029519668
LinkDB
All DBs
Position
LG7:complement(24722609..24773655)
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AA seq
490 aa
AA seq
DB search
MASARTENLGPIGMGLNKQNGQLRGVPKPASPQSGPLVLGSLLSKAVGAPQKAGASLEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLGKGRQILLYSATFPISVQKFMAKHLHKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHATNPNCEEGL
KETGRQQVEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaacggagaaccttggccctatcggcatgggactgaacaagcagaac
gggcagcttaggggggtgcctaaaccggcctctcctcaatcaggacccctcgtcctgggc
tctctgttaagcaaggctgtaggtgcaccccagaaagcaggtgcttccctggagggaact
ggcattagatttggagatgactggaaaaagagcctacagctccctcccaaagacactaga
gtcagaacctctgatgtaacatccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatttttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccttgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatacccatgctggagagaatagacctgaagaaggattat
atacaggctattgtgatggtgcccactcgtgagctggccctgcaggtgagccagatcagt
atccagatcagcaagcacctgggcggagtgaaagtcatggccaccacgggtggtaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacctggc
aggatcttggacttgataaagaagggcgtggccaaagtggatagagttcagatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatc
agcttcctgggcaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcataagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaggtccactgt
ctcaacacactcttctccaggttgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctggctaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcactgatctcttcaccagaggtattgacatccaggccgtcaat
gtcgtcatcaacttcgacttccccaagaatgctgagacatacctgcatcgcattggacga
tcagggaggtttggccacctgggcctggccatcaacctgatcacctctgaagaccgcttc
aatctgaagtccatcgaggaccagttggtcaccgacatcaagcctatccctggcagcatc
gacaagagcctgtacgtggcagaattccacgccaccaaccccaattgcgaggaggggctg
aaggagactggccgtcaacaggtggagccctag
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