Oncorhynchus nerka (sockeye salmon): 115131855
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Entry
115131855 CDS
T07952
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115131855 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115131855 (mbd4)
03400 DNA repair and recombination proteins [BR:
one03400
]
115131855 (mbd4)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
115131855 (mbd4)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
115131855 (mbd4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
115131855
NCBI-ProteinID:
XP_029519750
LinkDB
All DBs
Position
LG7:27988703..27993365
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AA seq
574 aa
AA seq
DB search
MLSLDYHMYQAKTEPTVDTTCASPTDNNTVTTRLKNNDLNTENPVTDTHLNPNSDIDTMA
VPGSDMRVTKEADPNAVKRQRSRQEDEESCPPSSMPPGWVRVVRRRKSGKTAGKMDIYIT
SPQGQRFRSRASLQAFLLRDAGGDLQIDDFDFTKAKSGSVAVTPLPSQERQRKVNQKDTR
HTSEANIKEDRQNTEENMEEGRILSLPPNNTKIANSAKSCKQRTRPRDKRTIITHLRPDM
PHLARGNHRPAAGRGTETGQPSDTNEDIKETNIQASVRRGEDDETERRLKVVAVVDDVIL
EKSPQRRPGLLREKLLRLAPLTDLQDALIGREEQLPVSLLLVPVLRVQSASESEGEAESE
GVGVGETEGVENIEAEVHDEELPSPQTTGERCIPLKDSQSKLLGEKRKTSPYFSRKSMRD
GLSPPRRKALRKWTPPRSPFHLVQETLFHDPWKLLVATVFLNKTSGKMAIPVLWQFFKLY
PSAEETRGAEWKPLSVLLRSLGLYELRAKIIIRFSDEYLTKQWRYPIELHGIGKYGNDSY
RIFCVEEWRQVEPQDHMLNKYHAWLWENHERLGI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgctatcacttgattatcatatgtatcaggctaaaactgagcctactgttgatacaacc
tgtgcttcccctacggacaacaacacagtcacaaccaggctcaaaaacaatgacctcaac
acagagaaccccgtcactgacacacatttgaatcctaattctgacatagacactatggct
gttccaggttcagatatgagagttaccaaagaggctgatcccaatgcagtcaagagacag
cggagcagacaggaagatgaggagtcgtgcccgccttctagtatgccgccgggctgggtg
agagtagtgagacggaggaaaagtgggaagactgcaggcaaaatggacatctatataaca
agtccccagggacagaggttccggtccagggcgtctcttcaagctttccttctcagagat
gcaggaggggatctacagatagatgactttgacttcaccaaagccaagagtggcagtgta
gctgtgactccgctgccaagccaggagagacagaggaaagttaatcagaaagacacacgt
catacctcagaggccaatatcaaagaagaccggcagaacacagaggagaatatggaagag
ggtagaatattaagcctgcctccaaataacacaaaaatagccaattccgcaaaatcctgc
aagcagaggaccagacccagagacaagagaacgataataactcatctgaggcctgacatg
cctcacctggcaagggggaatcacagaccggcagctgggagaggcacagaaacgggccaa
ccatcagacacaaatgaagacatcaaagagacaaacatacaagcctctgtgagaaggggt
gaggatgatgagactgagaggcgtctgaaggtcgtggcggtagttgacgatgtcatactg
gagaagagcccccagaggaggccggggctgctgagagaaaagcttctcaggctggccccg
ctcactgatctacaagatgctctcattggtcgagaagaacagcttcctgtgtcactgtta
cttgtcccagtccttagggtgcagtctgcttctgagagcgagggggaggctgagtctgag
ggtgtgggagtgggggagactgagggagtagagaatatagaagcagaggtgcatgacgaa
gagctgccatctccccagaccactggagagcgctgtataccactgaaagattcccagagc
aaactgttaggagagaaacggaagaccagtccttatttcagccggaagtcaatgagagat
ggtctaagcccccccaggaggaaagccttaaggaagtggacccctcctcgctcccccttc
cacctggtgcaggagacccttttccacgacccttggaaactcctggtagccaccgtgttc
ctcaacaaaaccagcggtaaaatggccatcccggtgttgtggcagttctttaagctttac
ccatcagcggaggagaccaggggggcagagtggaagcccctgtctgtgctgctgagatct
ttgggcctgtatgaactgcgagccaaaatcatcatcaggttctctgatgaatacctgacc
aagcagtggcgctaccctatagagctgcatgggattgggaagtatggcaatgactcctac
aggatcttctgtgtagaggagtggagacaggttgaaccccaggatcacatgctgaacaag
taccatgcttggctgtgggagaaccatgagaggttgggaatctga
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