Oncorhynchus nerka (sockeye salmon): 115131892
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Entry
115131892 CDS
T07952
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115131892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115131892
03036 Chromosome and associated proteins [BR:
one03036
]
115131892
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115131892
Coactivators
SAGA/TFTC/STAGA complex
115131892
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115131892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
VHS
Motif
Other DBs
NCBI-GeneID:
115131892
NCBI-ProteinID:
XP_029519824
LinkDB
All DBs
Position
LG7:29601545..29614434
Genome browser
AA seq
947 aa
AA seq
DB search
MAAGSDLLDDAFFNTEVDEKVVSDLVGSLESELTGSGRGNSAVRVQATANHIGNPAVCGK
SNVQDSKMGLSQELVKPGTSVQAGVINSTRSTMDTAAGTTAAAGSGMTAGHSQSKTGAAG
CVVTVVPDHGEGIGKTGSAGVQTLNGSSVVINSHNLVSSASSTVPAVTVVNNGPGSVVEG
NVILPSTSIQTSLMDNAVTSTVVSSQPSVLNSVPTVTLVRPPMHTTGAVTSPSGSNTFLT
SSVNVAHPACSGAQINKSEPKTAIQKTAQMTGTAAAVAVAKSPSTIAISPGGIRAIAPQV
LAPRLPQPQQNAPNIQNIQLPPGMVLVRSESGQLLMIHQQTLAQMQAQSQSPMTPRPATP
TSTPPVQITSVQAPGMPLMARQVTPTTIIKQGTPAQTTVLQRPPVLQQNTIVLGGAAATP
GQAPVQPGSAATAAVNQRAGTPGATGTPGTPATTMETLENVKKCKNFLSTLIKLASSGKQ
SSETTASVKDLVKSLLEGKIEAEEFTSRLYRELNSSPQPYLVPFLKRSLPALRQMTPDST
AFIQQSQLPQASVQPASSSTTLTTVALGGTAAAQRLPFNRTTSPGAKGTMHQSPVISPAL
TPHSKPGLMVPQQQGALASTQVTLAQSPMVTFRGQSHSRIIMGHPQVVKQLQTVPVVKQA
LAPGAKVTLGRHSMLSVAQTNKLKEASGGTFKDDDDINDVASMAGVNLSEESARILATNS
ELVGAVTRSCKDEAFLHTTSLTRRVQEIGRRFGVIDLGPEVVNYVSHATQQRLQNLLEKV
TEVAQQKNITFKEDDKYEQVSDVRAQLKFYEQLDQMEKQRKEEQEREILMKAAKSRSRQE
DPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGPRKKRKMESPVNGAGAEGSGSGPS
SSGGANSGGSRPQRQRITRVNLRDLLFCLENERETSSSHLLYKGFLK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatttgctggatgatgcctttttcaacactgaggtggacgagaaa
gtagttagtgatctagttggatctttggagtctgagctcacgggatcgggtcgcggaaac
tctgcagtcagggtccaggctacggcaaatcacattggcaaccccgctgtatgtggcaaa
tccaatgtccaggacagcaaaatgggactttcacaagagcttgttaaaccagggactagc
gtccaagcgggtgtcattaatagtacgaggtccaccatggatacagcggccgggacgacg
gcggcggcgggctcaggcatgacagcgggacacagtcagagtaagactggggcagccggt
tgtgtggtaacagtggttcccgatcacggggaaggaatcgggaaaaccgggtcggctggt
gtacaaactttaaatggaagtagcgttgtaataaactctcataatttggtgagctcggca
agcagcacggtgcccgccgtcacagttgtcaacaacggaccaggctccgtggtcgaagga
aacgtaatcttaccctcaacttccattcaaacctctctaatggacaatgctgtcacttca
actgtagtatcgtctcagccatctgttctaaacagtgtgcccactgtcacgctcgtgagg
ccgcctatgcacaccaccggagcagtcacctcgccgagcgggagcaatacctttctgaca
tcatctgtcaacgtcgctcaccctgcatgttcaggagcacaaatcaacaagtcggagcca
aaaacggcaatacaaaagaccgcacagatgacggggacggcagcagctgtagctgtagcg
aaaagcccatcgactattgcaatcagtcctggtgggataagggcgatcgctcctcaggta
ttggccccaagacttccgcagccccaacagaatgctccaaacatccaaaacattcagctc
cctccagggatggtgttggtgcgcagtgagagtgggcagctgttaatgatccaccagcag
accctggcccagatgcaggctcagtcccagagccccatgaccccacggccagccaccccc
accagcacgccccctgtccagatcacctctgtacaggctccagggatgcccctcatggcc
cgtcaggtgacccccaccaccatcatcaagcagggcaccccggcccagactactgtcctc
cagaggcctcctgtgctacagcagaacaccattgtgctgggtggggcggctgccacccca
ggtcaggccccagtgcagcctggctcggcagcaacagcagcagtcaaccagcgagcaggg
acccccggagctaccgggacaccaggcactcccgctaccactatggagaccctggagaat
gtgaagaaatgcaagaacttcctttccacgctgatcaagctggcatccagcgggaagcag
tcgtcagagaccacggccagcgtcaaggacctggtcaagagcctgttggaaggtaagatc
gaagcggaggagttcaccagtcggttatatcgggagctcaactcctctcctcagccatat
cttgtgcctttcctcaagaggagtctccctgcactgcgtcagatgaccccagactcgaca
gccttcatccagcagagccagcttccccaggccagcgtccagcctgcctcctcctccaca
accctgactacagtggcgctggggggcacggccgccgcacagagactcccttttaacaga
accaccagccccggggccaaggggaccatgcaccagtcccctgtcatcagcccggccctg
acacctcacagcaagcctggcctgatggtgccccagcagcagggggcgttggcgagtact
caggtaactctggcccagtcgcccatggttactttccgaggccagtcccacagtcgcatc
atcatgggacatccgcaggtggtcaaacagctgcaaacagttcctgtagtgaaacaagct
ctagcaccaggggccaaggtaacactggggcgccactctatgctctctgttgcacagacg
aacaagctgaaggaggcaagcggaggaaccttcaaagatgatgatgatatcaatgacgtg
gcctccatggctggagtcaacctgtcagaggagagcgcccgtatactggcaaccaactct
gagctggtgggcgcggtgactcgctcctgtaaggacgaggccttcctccacaccacctcg
ctaacccggagagtacaggagatcggtaggaggtttggggtgattgacctggggccagag
gttgtcaactacgtttcccatgcaacacagcagcggctgcagaacctgctggagaaagtg
acggaggtggcgcagcagaaaaacatcaccttcaaggaggatgataagtatgaacaggtg
agtgatgtgcgagcccagctgaagttctatgagcagctggatcagatggagaaacagagg
aaggaggagcaggagagggagatcctgatgaaggctgccaagtctcgatcgcgacaagag
gacccagagcagcttcggctcaaacagaaggccaaagagatgcagcagcaggagctgaat
cagatcaggcagaaggaggccaacatgacggccctggcagccatcggccccaggaagaaa
cggaaaatggagtcccccgtcaacggcgccggggctgagggttctggctctggtccctcg
tcgtcgggtggggccaatagcggaggctccagacctcagcgccagcgcatcaccagggtc
aacctcagggacctgctcttctgtctggagaatgagagagaaaccagtagctcacattta
ctctacaaaggcttcctcaaataa
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