Oncorhynchus nerka (sockeye salmon): 115131942
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Entry
115131942 CDS
T07952
Name
(RefSeq) mRNA export factor-like isoform X1
KO
K14298
mRNA export factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115131942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115131942
03036 Chromosome and associated proteins [BR:
one03036
]
115131942
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115131942
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115131942
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WDR55
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_EIPR1
eIF2A
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Nup120_160
WD40_MABP1-WDR62_2nd
Exonuc_X-T_C
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
115131942
NCBI-ProteinID:
XP_029519912
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Position
LG7:31599418..31604556
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AA seq
372 aa
AA seq
DB search
MSLFGTSTGFGAGGFGAATTDTHNPMKDVEVTSPPDDSISCLAFSPPAMPGNFLIGGSWA
NDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSEDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPIRTVHWIKAPNYNCIMTGSWDKTLKFWDTRSPNPMMSLQLPERCYCADVVYPMA
VVASAERGLIVYQLENQPSEFRRIDSPLKHQVTGFTYQHRCIAIFKDKQNKPAGFALGSI
EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGR
FSFWDKDARTKLKTSEQLDQPITACSFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLR
NATEELKPRNKK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtttgggaccagcactgggtttggcgcagggggattcggagcggcaaccacg
gacacacacaacccaatgaaggatgtggaagtaacctcacccccagatgacagcatcagt
tgcttggcgtttagtccccctgccatgccagggaacttcttgataggggggtcctgggcc
aatgatgtgaggtgttgggaggtacaggacaatgggcagacagtccccaaagcccagcaa
atgcacacaggtccagtccttgatgtctgctggagcgaagatggaagcaaggttttcact
gcatcttgtgataagactgccaaaatgtgggatctcaacagcaaccaggcaatacagatc
gcacagcatgatgctcctatcagaacagtccactggatcaaagcccccaactacaactgc
atcatgacaggcagctgggacaaaactctgaagttctgggacacccgttcgcccaaccca
atgatgtccctgcagctgccggagaggtgctactgtgcagacgtggtgtatcccatggca
gtggtagcatcggcagagcgaggtttgattgtatatcagcttgagaaccagccgtccgag
ttcaggaggatagactcaccactcaaacaccaggtgactggtttcacataccagcaccgc
tgcatagccatctttaaggacaaacagaacaagcctgctggatttgctcttgggagcatt
gaagggcgggtcgccattcactacatcaaccctcctaacccagccaaggataacttcacc
ttcaagtgccacaggtcgaatggaaccaacacaaccacaccacaagacatctatgctgtg
aatgccatctccttccaccctgtccacggtacactggcgactgttgggtctgacggtcgc
tttagcttctgggataaagacgctcgcaccaagctgaagacctcggagcagctggaccag
ccaatcacagcttgctcgttcaacaacaacggcaacatctttgcctacgcctctagctat
gactggtcaaaggggcatgagtactacaaccctcagaaaaagaactacatcttcctgcgt
aatgctactgaggagctgaaacctcggaataagaaatga
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