Oncorhynchus nerka (sockeye salmon): 115131953
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Entry
115131953 CDS
T07952
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
115131953
NCBI-ProteinID:
XP_029519934
EnsemblRapid:
ENSONEG00000000834
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Position
LG2:619206..624702
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AA seq
776 aa
AA seq
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MAKPLPSTHLLVVALQLCLVLRHHARGAAYYGHKQPQHPQQHLPQQHQPMQQIPHMPLGN
GYGNGNGNGYGNGDGLPKQQYGKEMPQHMPYGKEMPYVLPQYGQELPQMLPQMHEQPQMP
PNKGKGKGQSYPSNGKGLGGPPPDDRGLQGPGPEGPPGAQGPPGPQGPPGMLGQGMPGPH
GKPGPPGPQGYPGIGKPGMPGMPGKPGGGGQPGPKGDLGPGGDVGPMGMPGGPGLPGPPG
LPGIGKPGGQGLPGQPGPRGEPGHKGIPGLPGLPGPKGDKGIGLPGLPGLKGPGGPPGPP
GQGGLPGVGKPGLNGLPGLPGGAGKPGPPGEGGLAGPPGEGGEPGPPGLPGIGKPGQDGL
PGQPGFPGGKGESGPPGLPGGPGLPGYGKPGYPGPKGDKGHGGFPGAPGPKGDKGHGGLP
GQEGLPGPNGPPGLPGSIGPPGGLGFPGPKGEGGNGGPKGLPGPKGEPGPPGLPGQGGYP
GEGGQPGPRGIPGPLGPKGDNGHKGLPGLPGAPGMPGSRGEGGMPGEKGHQGPKGIPGNF
GPGGPLGPPGLPGPKGELGPPGKPGYPGEGKPGVPGALGPQGKPGNGGPPGQPGQPGQPG
PPGPPGPPTQPPGLGEILPALGPGLDGLKQGGYKKPKNGGDRNGLEMPAFTAQLTNPFPP
VGSPVVFDKLLYNGHQDYNPQTGVFSCTIPGIYYFAYHVHCKGANVWVALVKNNEPVMYT
YDEYKKGSLDQASGSAVLPLQQGDTVHVQLPSDQAAGLYAGQYVHSSFSGYLLYPM
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctcccctctactcatctattggtggtggcactccagctgtgtctagta
ctacgccaccatgcccgtggggcggcatattacgggcacaagcagccgcagcacccacag
cagcaccttccccagcagcaccagcccatgcaacagatacctcacatgcccctagggaac
gggtatgggaacgggaacgggaacgggtatgggaacggggacgggctgcccaagcaacag
tacgggaaggaaatgccacaacatatgccatacggcaaagagatgccatatgtgctgcca
cagtatgggcaagaacttccacagatgcttccacagatgcacgaacaaccccagatgcca
cccaataagggcaagggaaagggtcagtcatatcccagtaatgggaaaggccttggaggc
ccaccacctgatgataggggactacagggtcctggtcccgaggggccaccaggagcccaa
gggcctccaggaccacagggccctccagggatgctaggtcaagggatgcccggcccccat
ggtaaaccaggccctcctggtccccaagggtatcctgggatagggaaacccggaatgccg
ggaatgcccggtaaacctggtggaggcggccagccaggtccgaagggcgaccttggtcct
ggtggtgatgtaggaccaatggggatgcctggggggccaggtcttccagggccaccaggc
ctgccaggcatcgggaagccagggggtcagggactgcctgggcagcctgggcctcgaggg
gagcctggacacaagggcatacctggactgcctggtcttcctgggcccaagggagacaaa
gggattggcttgccaggattgccaggtttgaaaggacctggtggaccacctgggcctcct
ggtcaagggggtttgccaggggttggaaaaccaggtctgaatggactaccaggattgccc
gggggggcaggaaaaccaggcccacctggagaaggaggacttgctggtccaccaggtgaa
ggaggagaaccaggaccacctgggctaccaggtattggcaagcccggtcaagatggtttg
ccaggacaaccagggttcccaggtggtaaaggggaatcaggcccaccaggtttgccaggg
ggcccaggcctacctggttacggaaagccaggatatcctggaccaaaaggagacaaaggg
catggaggttttcctggagctccaggcccaaaaggtgacaaaggtcatggaggtctccca
gggcaggaaggccttcctggacccaacgggccaccgggcctgcccggttccattgggcca
cctgggggtcttggtttcccaggtccgaagggagaaggtggcaatggagggccaaagggg
ctgccaggtcctaaaggtgagccagggcctccagggcttcctggacagggtgggtatcct
ggagagggtggtcaaccaggaccgagaggtataccagggccactgggtccgaaaggggat
aacggccacaaagggttacctggcctccctggagctcctggaatgcccggttcaagggga
gaaggtggaatgcccggagaaaaaggtcaccagggacccaagggaatccctggaaatttt
ggtccaggtgggccacttggtcctcccggtcttcccgggccaaaaggcgaacttggtcct
ccagggaaacctggctaccctggcgaaggtaaacctggtgttccaggcgctttagggccc
caagggaaacctggcaacggtggaccccctggtcagcctggacaaccaggacaacctggt
ccccctggcccacccggaccccccacccaaccacctggtcttggtgaaatcctccctgcg
ctgggtcctggtctggacggtcttaaacaaggcggttacaagaaaccgaagaatggaggg
gacaggaacggcctggagatgccagcattcacggctcagctcaccaatcctttccccccc
gtaggctcccctgtggtcttcgacaagctcctgtacaatggccatcaggactacaatccc
caaaccggcgtcttcagctgtaccataccgggaatctattactttgcttaccacgtccac
tgcaaaggagcgaatgtgtgggtggcgctggttaagaacaatgagcctgtgatgtacaca
tatgatgagtacaaaaagggcagcctggaccaggcgtcagggagcgctgtgctcccttta
cagcaaggagacactgtgcatgtacagcttccatctgaccaggcagcaggactttatgcc
ggtcaatatgtccactcttcattctccggatatttattgtacccaatgtaa
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