Oncorhynchus nerka (sockeye salmon): 115131977
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Entry
115131977 CDS
T07952
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
115131977 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115131977 (xpc)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
115131977 (xpc)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
115131977
NCBI-ProteinID:
XP_029519970
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All DBs
Position
LG7:complement(32536702..32547723)
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AA seq
921 aa
AA seq
DB search
MVNSVIHDFVCNTIKTKVHDYIWNEASMAKRKESADTAVKTDTKKPKKVAKGKAEGPRAK
KENGEETEKVQRKAKHKSCLSKPKVGDTAETNTSKYFQNETPVKEEPADMSPETDLIPPF
IRARKDTVKPVKEEEEDSEEDEDWEEVEELSEPLGPVEPALPSQPVEIEIETPDIIHKRQ
KREKKKAEFETYLRRMMNRFNKDVVEDTHKVHLMCLLANGMFRNRLCSTPDLLAISLSLL
PTHFTMVAKERIDTNYLSGLLKWFGATFTLNPELPCEERPDPQALLERRLGSLTARDHQE
MTHLFLLVLRSLRLFCRLVLSLQPLSLKPPSAKSKAKNSGSPPRKSPSQKKPPKESPSEP
KVSPGSKRPAGGRAERGGKKAKKKEAGETEKAVSVGQKPKNSKRRSIASKVSYKEESSEG
EGPSDGEEFQLTNEEDSEDSEGGAKAIRAKKVKGGKSKSTAPQKISSGGKKSEEDDDDWE
GNEEEGEEEQGMKRGKRKEGKGADEWLEVYLEKTGCWVCVEVLQGVGQPQLCSKQATHPM
TYVVAVDGDGHLKDLGSKYDPTWMTSTRKRRVDEEWWEVTLEPFLGPESERDVQEDKELQ
AKLLDKPLPTSIAEFKNHPLYALKRHLLKYEALYPSTAAILGYCRGEPVYSRDCIHTLHS
RDTWLKEARTVRLGEEPCKMVRGFSNRSRKVRMASEQKDKDDLALFGEWQTEEYQPPVAV
DGRVPRNDFGNVYLFKPCMQPVGCVHLRLPNLQRVAKKLDMDCAAAITGFDFHGGYSHAV
TDGYIVCEEHEEILRAAWAEDQEIQRQKEKEKREKRVVANWTLLVKSLLIRERLQRRYGK
KGPTPAGGLDQLKSQDREGVEGLSSDEEGEGGPNTASAALAQAWPQNRQGEQDSGTGGAS
KTTSKRQKRGQEKHLFPFEKV
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggtaaactcagtcattcacgattttgtctgcaacactattaaaacaaaagtacacgat
tacatttggaacgaagcgagcatggccaagcgtaaagagtctgcagacacagcagtgaag
accgacacaaagaagccgaagaaggttgcaaaaggcaaagctgaaggaccaagagccaaa
aaagagaatggagaggaaacggagaaggttcagagaaaagccaagcacaaatcctgtctc
tctaaacctaaagtaggggacacagccgaaacaaacaccagcaaatacttccagaacgag
actccagtgaaggaggagcctgctgatatgagtcctgagactgatctcatccctcctttt
atcagagccagaaaagacactgtaaagcctgtgaaagaagaagaagaggacagtgaggag
gatgaagactgggaggaagtggaagagctgtctgagcccttaggtccagtagagccagcc
ctgccctcacagcccgtggagatagagattgagaccccagacattatccacaagaggcag
aaaagggagaagaagaaggcggagtttgagacctatttgcgacgcatgatgaaccgcttc
aacaaagatgtggtcgaggacacacacaaggtccacctcatgtgtcttctagccaatggg
atgttccggaaccggttgtgtagcacaccggacctgctggccatcagcctgtctctgctg
cccacccactttaccatggtggccaaggaacgcattgacaccaactacctctctggcctg
ctcaagtggtttggggcgacgttcacgcttaacccggagcttccctgtgaggagaggccc
gacccacaggccctgctggagaggaggctgggcagcctcaccgctagagaccaccaggaa
atgacacatctgttcctattggtgctgaggtcgttgcggctcttctgtcgactggtgctc
tctctgcagcccctgtcactgaagcccccgtcagccaagagcaaggccaagaactcaggc
agcccgcctaggaagagtccatcgcagaagaagcctccaaaagagagcccctcagagccc
aaggtatccccagggtccaagagaccggcaggggggagggccgagagaggagggaagaag
gcaaaaaagaaagaggcaggggagactgaaaaggctgtgtcggtgggacagaaacccaag
aactccaagcgccgcagcatagcctcgaaggtgagctacaaagaggagagcagtgaaggg
gaggggccaagtgatggggaggagttccagctgaccaatgaggaagacagcgaggactct
gagggaggagccaaagcaatccgagccaagaaagtaaaaggaggtaagagcaagagtaca
gctccacagaaaataagtagtggaggcaagaagagtgaagaggatgacgacgattgggag
ggaaacgaagaggagggggaggaagagcaggggatgaagcggggtaagaggaaggagggg
aagggtgcagacgagtggctggaggtgtacctggagaagactgggtgctgggtctgtgtg
gaagtgctgcagggcgtggggcagcctcaactgtgctccaagcaggccacccatcccatg
acctacgtggtagccgtggacggggacggtcacctgaaggatctgggcagcaagtacgac
cccacctggatgacctccaccagaaagcgccgggtggacgaggagtggtgggaggtgacg
ctggagccattcctcggccccgaatctgagagggacgtccaggaggataaagagctccag
gcgaagttgctggacaagccgttgcccacgtcgatagcagagttcaaaaaccacccgctg
tacgccctgaagagacatctactgaaatatgaagctctctacccctccacagcggccatc
ctcgggtactgcaggggagagcctgtctattccagggactgtattcacacgctacactcc
cgagacacctggctgaaggaggcgcgcactgtccgtctaggagaggagccctgcaagatg
gtgagagggttttccaatcgctctcggaaagtcaggatggcatcagagcagaaggacaaa
gatgacctggctctgtttggtgaatggcagacagaggagtaccagcccccagtagctgtg
gatggcagggtgcctcgtaacgacttcggcaacgtttacctgttcaaaccctgcatgcag
ccagttggctgtgtccacctgcgtctgcctaacctccagagagtggctaagaagctggac
atggactgtgcagctgctatcactggctttgactttcacggtggctactctcatgctgta
acggacggctacattgtgtgtgaggagcatgaggagatcctgagagcagcctgggcggaa
gaccaagagatacagagacaaaaggagaaggagaagcgggaaaagagggtagtggctaac
tggactctgctggtgaagagcctgctgatcagggagagactacagcgtcgctatgggaag
aaaggcccaacacccgcaggaggcctggaccaactgaagagccaggatagggaaggggta
gagggtctatcgtctgacgaggaaggggaaggtgggccgaacacggcttctgccgcactg
gcacaggcctggccccagaacagacagggggagcaggacagtggcacggggggagcctcc
aaaactacatccaaacggcagaaaaggggccaggaaaagcaccttttcccctttgagaaa
gtatga
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